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Reika Watanabe

@reikawatanabe

Biologist fascinated by and specialized in cellular cryo-electron tomography @ljiresearch.bsky.social. #teamtomo, #cryoET, #virology

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19.11.2024
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Latest posts by Reika Watanabe @reikawatanabe

Sounds good, but, we also consider suitable area for high-resolution Cryo-ET.

11.03.2026 08:02 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Figure 1. Cryo-EM of abundant protein complexes in native membranes.

Figure 1. Cryo-EM of abundant protein complexes in native membranes.

Figure 2. Cryo-EM of membrane proteins in vesicles.

Figure 2. Cryo-EM of membrane proteins in vesicles.

Figure 3. 3D reconstruction of V-ATPase in native synaptic vesicle membranes.

Figure 3. 3D reconstruction of V-ATPase in native synaptic vesicle membranes.

Figure 4. Generation of membrane vesicles for structure determination of proteins in their native lipid bilayer.

Figure 4. Generation of membrane vesicles for structure determination of proteins in their native lipid bilayer.

I've written a review on what I think is an extremely exciting direction in cryo-EM:

Cryo-EM of endogenous membrane proteins in their native lipid bilayer

Open access in Quarterly Reviews of Biophysics:
doi.org/10.1017/S003...

06.03.2026 12:40 πŸ‘ 159 πŸ” 58 πŸ’¬ 3 πŸ“Œ 1
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Deltaviruses spread through a viral Trojan Horse Hepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr…

We found a viral Trojan Horse: a virus can hide inside another virus.This one surprised us: deltaviruses don’t just borrow a helper virus. They can travel inside it.
A literal Trojan Horse β€œvirus-in-a-virus” route into cells. 🀯 Kudos to 1st author @viroscope.bsky.social and co-authors !

06.03.2026 18:29 πŸ‘ 192 πŸ” 96 πŸ’¬ 8 πŸ“Œ 14
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A research team from the Max Planck Institute for Multidisciplinary Sciences, the Institut Pasteur, and EMBL has shown in a Nature paper how the influenza polymerase, a molecular thief, uses the host RNA to replicate.

Check out the MPI press release: www.mpinat.mpg.de/5179649/pr_2...

05.03.2026 13:49 πŸ‘ 14 πŸ” 5 πŸ’¬ 2 πŸ“Œ 0

Apply now! @vbcscitraining.bsky.social offers more than 25 fully-funded PhD positions! GMI group leaders are also recruiting new students.

04.03.2026 15:33 πŸ‘ 5 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0
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π—˜π˜…π—°π—Άπ˜π—Άπ—»π—΄ π——π—²π˜ƒπ—²π—Ήπ—Όπ—½π—Ίπ—²π—»π˜π˜€ 𝗢𝗻 π— π—Άπ—°π—Ώπ—Όπ˜€π—°π—Όπ—½π˜† π—₯π—²π—½π—Όπ—Ώπ˜π—Άπ—»π—΄! If you're involved in creating, processing, or publishing microscopy data, take a look at the new checklist for reporting requirements provided by @quarep-limi.bsky.social in @jcb.org πŸ”— rupress.org/jcb/article/...

02.03.2026 06:43 πŸ‘ 17 πŸ” 14 πŸ’¬ 0 πŸ“Œ 0
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Structure-guided design of a PfCyRPA-based vaccine against blood-stage malaria - EMBO Molecular Medicine Effective vaccines against malaria are urgently required. All components of the PfPCRCR complex are essential for erythrocyte invasion by Plasmodium falciparum and are potential vaccine immunogens aga...

This immunogen is cheap and easy to produce and elicits a high quality antibody response. Project led by @nawsadalam. Read all about it:
link.springer.com/article/10.1...

03.03.2026 21:01 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Mapping the yeast atructural interactome with AlphaFold3: an open call for collaboration We are excited to announce the early-stage release of our S. cerevisiae Β structural interactome mapping project. Using AlphaFold3 (AF3), w...

We have started a project trying to predic the interactions/structures of all yeast protein pairs using an AlphaFold pooling approach. We are making the current dataset open and we welcome collaborations.
www.evocellnet.com/2026/03/mapp...

04.03.2026 10:36 πŸ‘ 97 πŸ” 52 πŸ’¬ 6 πŸ“Œ 0
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The new Vienna BioCenter Interdisciplinary Postdoctoral Program (VIPΒ³) is here! We have 8 fully-funded positions for scientists with a PhD in biology, chemistry, physics, bioinformatics etc.

The call is open!

More information: training.vbc.ac.at/post-docs/vi...

#VBCPostDoc

02.03.2026 13:18 πŸ‘ 13 πŸ” 11 πŸ’¬ 0 πŸ“Œ 1
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High-resolution in situ structures of hantavirus glycoprotein tetramers The cryo-EM structures of Andes hantavirus (ANDV) glycoprotein tetramers, dimers of tetramers, and ADI-65534 Fab complexes on eVLPs unveil the molecular basis of New World hantavirus glycoprotein architecture, acid-induced membrane fusion, and antibody-mediated neutralization. Immunization with repRNA encoding ANDV-VLPs elicits high neutralizing-antibody titers.

Now online! High-resolution in situ structures of hantavirus glycoprotein tetramers

27.02.2026 23:39 πŸ‘ 8 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0
ChimeraX screenshot showing CubeNTube plugin.

ChimeraX screenshot showing CubeNTube plugin.

The new ChimeraX CubeNTube plugin allows erasing parts of maps using cube, cylinder, and custom shapes and has undo. Created by Tamino Cairoli. Available from ChimeraX menu Tools / More Tools....

24.02.2026 19:55 πŸ‘ 69 πŸ” 18 πŸ’¬ 0 πŸ“Œ 1
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New insights uncovered into crystal-like structure of proteasomes in membrane-less organelles A new study from a team of Canadian and German researchers has uncovered never-before-seen details about what happens to proteasomes, the cell’s garbage disposal system, when there is not enough…

Study from a team of Canadian and German researchers has uncovered never-before-seen details about what happens to proteasomes, the cell’s garbage disposal system, when there is not enough energy. bit.ly/3OGywRX

23.02.2026 14:24 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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The (microbe) highway to the danger zone LJI Professor Mitchell Kronenberg shows how immune cells defend your most vulnerable organs. His discoveries recently earned top recognition from the American Academy of Microbiology.

Your airways and your gut are high-traffic areas for the microbes of the world. 🦠

For more than 40 years, LJI's Mitchell Kronenberg has studied the T cells that step up to defend our most vulnerable organs.

Now Kronenberg has been elected fellow of the AAM: bit.ly/4rBrcps

@asm.org #microbiology

23.02.2026 18:10 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Declines in Cervical Cancer Incidence in U.S. Varied Substantially by State, Aligning With HPV Vaccination Rates, New ACS Study Finds ATLANTA, February 23, 2026 β€” A new study by researchers at the American Cancer Society (ACS) shows cervical cancer incidence rates in women ages 20-31 declined by 27% in the United States...

β€œCompared to the reduction at the national level, the large declines in cervical cancer incidence observed in several states were very encouraging"

Cancer rates decreased in states with the highest HPV vaccination rates - #MedSky + #OncSky + #ReproSky.

pressroom.cancer.org/declines-in-...

24.02.2026 02:19 πŸ‘ 81 πŸ” 35 πŸ’¬ 2 πŸ“Œ 2

Nice #alphafold

17.02.2026 13:53 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Tried it. Its awesome. Shame the code isn't available. Webserver only, how long will it last??

17.02.2026 22:06 πŸ‘ 10 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Long in the making, but happy to present the Chlamydomonas chlororibosome!
Cryo-ETπŸ”¬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv πŸ“–: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧡

10.02.2026 08:35 πŸ‘ 155 πŸ” 54 πŸ’¬ 4 πŸ“Œ 6
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GitHub - GrotjahnLab/surface_morphometrics: Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging. Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging. - GrotjahnLab/surface_morphometrics

I've been working on Surface Morphometrics for a new version (coming soon), and made some significant (AI-assisted) performance improvements, especially in pycurv (20-50x!). If you've had technical issues or just felt like it was too slow, give it another try! #teamtomo github.com/GrotjahnLab/...

04.02.2026 00:32 πŸ‘ 37 πŸ” 15 πŸ’¬ 1 πŸ“Œ 0
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πŸš€ CryoSPARC v5.0 BETA is here!

We’re excited to deploy another major #CryoSPARC release to help enable and accelerate #cryoEM data analysis. v5 has a redesigned underlying software system and many new features - highlights in thread!

Full changelog: cryosparc.com/updates/v5.0.0

27.01.2026 20:36 πŸ‘ 67 πŸ” 34 πŸ’¬ 1 πŸ“Œ 1

We are running the cryo-ET image processing workshop again this year! Come learn everything tomo: STA, segmentation, heterogeneity analysis from @baradlab.com @williamnwan.bsky.social and others!

Apply!

20.01.2026 14:20 πŸ‘ 22 πŸ” 18 πŸ’¬ 0 πŸ“Œ 1
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A super detailed protocol + video on Cryo-ExM - Cryo-Expansion Microscopy, led by the labs of our former postdocs @marinelap.bsky.social & @ebertiaux.bsky.social.
Clear, practical, and very useful for anyone doing nanoscale imaging πŸš€ app.jove.com/t/68595/expa...

25.12.2025 13:41 πŸ‘ 126 πŸ” 32 πŸ’¬ 0 πŸ“Œ 1
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Recruitment for the EMBL International PhD Programme is officially open! πŸ”Š

At EMBL, we train young scientists to become skilled and creative future leaders in academia, industry and other sectors. Start your career in the life sciences with us!

πŸ”Ž Read more here:
tinyurl.com/4jdt2ra5

26.01.2026 08:50 πŸ‘ 23 πŸ” 33 πŸ’¬ 1 πŸ“Œ 1

SHAPES being the key word, amirite @nanigrotjahn.bsky.social
github.com/GrotjahnLab/...

Should be an interesting #TeamTomo talk. Check it out! πŸ§ͺ πŸ”¬

23.01.2026 12:45 πŸ‘ 19 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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When two years of academic work vanished with a single click After turning off ChatGPT’s β€˜data consent’ option, Marcel Bucher lost the work behind grant applications, teaching materials and publication drafts. Here’s what happened next.

Everyone should read this!

πŸ§ͺ #AcademicSky

When two years of academic work vanished with a single click

www.nature.com/articles/d41...

23.01.2026 19:40 πŸ‘ 15 πŸ” 6 πŸ’¬ 3 πŸ“Œ 2

Mechanism of membrane perforation in rotavirus cell entry www.biorxiv.org/content/10.64898/2026.01.21.700916v1 #cryoEM

24.01.2026 09:16 πŸ‘ 7 πŸ” 4 πŸ’¬ 0 πŸ“Œ 1
From Amgen Scholar to PhD at the Institut Pasteur - Student testomony
From Amgen Scholar to PhD at the Institut Pasteur - Student testomony YouTube video by Institut Pasteur EDUCATION

🌟 Last call to apply!
Amgen Scholars Program 2026 – Institut Pasteur
πŸ“… Jul 6–Sep 5 – ⏳ Deadline: Feb 1

Marcel Nos Llorens, PhD student & former Amgen Scholar, says: β€œGo for it! It’s a unique chance to gain hands-on research experience and step toward a career in science.” πŸ”¬

πŸ“© Apply: bit.ly/4t0PdaH

23.01.2026 13:01 πŸ‘ 2 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
PDB 7jsn colored by DAQ scores of fit in cryoEM map.

PDB 7jsn colored by DAQ scores of fit in cryoEM map.

The ChimeraX DAQplugin computes DAQ scores showing the agreement between atomic models and cryoEM maps. Available from ChimeraX menu Tools / More Tools. cxtoolshed.rbvi.ucsf.edu/apps/chimera...

16.01.2026 21:50 πŸ‘ 42 πŸ” 11 πŸ’¬ 0 πŸ“Œ 2

Antigenic landscape of rabies and related lyssaviruses revealed by cryo-EM https://www.biorxiv.org/content/10.64898/2026.01.14.699513v1

15.01.2026 01:17 πŸ‘ 3 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Anoctamin-2-specific T cells link Epstein-Barr virus to multiple sclerosis Researchers identified anoctamin-2 (ANO2) as a frequent autoimmune target in multiple sclerosis, with T cell responses against ANO2 occurring in over half of patients. These ANO2-specific T cells shar...

Epstein-Barr Virus #EBV was linked to #MultipleSclerosis - now a plausible cause has been found, misidentification by longterm memory T-cells that pick on the wrong protein, ANO2, instead of the EBV-antigen. Massive inflection towards the elimination of MS!!!
πŸ§ͺ🧠Cell www.cell.com/cell/fulltex...

15.01.2026 01:41 πŸ‘ 872 πŸ” 283 πŸ’¬ 11 πŸ“Œ 47

Incredible resource for #teamtomo. Congratulations and thank you for all involved πŸ’πŸŽ‰πŸŽŠ

10.01.2026 19:35 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0