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Crick Image Analysis Team

@crick-ia-team

We are the Image Analysis Team at the Francis Crick Institute in London https://www.crick.ac.uk/research/platforms-and-facilities/light-microscopy/image-analysis

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03.10.2025
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Latest posts by Crick Image Analysis Team @crick-ia-team

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Back with the image analysis trainings for 2026! This morning, we looked at image quality control. We roped in Lotanna from the wider @calm-stp.bsky.social team to tell us about the microscopy acquisition side of quality control. Great training debut for her (and impressive use of memes)!

18.02.2026 13:07 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Welcome! You are invited to join a webinar: CCP-volumeEM Show and Tell - February 2026. After registering, you will receive a confirmation email about joining the webinar. 'A brief introduction to the use of containers for reproducible image analysis' with Dr Martin Jones Abstract: Reproducibility of scientific data analysis is critical, but can be particularly challe...

Do you do image analysis?

Want to make it more robust and reproducible?

Have you heard of containers, but don't know why they’re useful, and how to use them?

@martinjones.bsky.social will explain all: crick.zoom.us/webinar/regi...

13.02.2026 11:19 πŸ‘ 10 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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❀️#LoveData26 Show your data some love! Register for 2026 Image Data Community Days for live talks, workshops and networking. All are welcome!
πŸ—“οΈ Aprβ€―13–17, online
Register πŸ”½
www.eurobioimaging.eu/events/image...

11.02.2026 13:32 πŸ‘ 3 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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πŸ”¬UK researchers: Access cutting-edge bioimaging tech + expert support with our User Access Fund!

πŸ’· Β£5k for imaging
πŸ’· Β£2k for image analysis

Choose from 6 top UK facilities, contact them, then apply!

rms.org.uk/user-access-fund

⏰ Next deadline: 31 March
βœ… Decision in 4 weeks

Pls share!

02.02.2026 11:15 πŸ‘ 15 πŸ” 13 πŸ’¬ 1 πŸ“Œ 4
https://doi.org/10.5281/zenodo.14762435
https://bsky.app/profile/falk-illustrations.de

https://doi.org/10.5281/zenodo.14762435 https://bsky.app/profile/falk-illustrations.de

AMAZING JOB OPPORTUNITY ALERT!!!

@calm-stp.bsky.social is hiring a Data & Systems Steward! 🧬

πŸ”ΉManage #bioimage data & #OMERO admin
πŸ”ΉAutomate via #Python/#Bash
πŸ”ΉSupport #FAIR principles
πŸ”ΉWork closely with @crick-ia-team.bsky.social

⏰ Deadline: 08 Feb 2026

Apply: www.crick.ac.uk/careers-stud...

31.01.2026 14:34 πŸ‘ 12 πŸ” 10 πŸ’¬ 1 πŸ“Œ 0
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Machine learning-based image analysis with ilastik

Applications are currently open until February 20th. You can find additional information at this link (or on the intranet for Crick people!):

www.crick.ac.uk/whats-on/mac...

27.01.2026 15:37 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social

The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)

27.01.2026 15:37 πŸ‘ 11 πŸ” 9 πŸ’¬ 1 πŸ“Œ 0
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Data and Systems Steward Salary for this Role: From Β£43,630 with benefits, subject to skills and experience. Job Title: Data and Systems Steward Reports to: Kurt Anderson Closing Date: 08/Feb/2026 23.59 GMT Job Description: D...

We Are hiring!! πŸ‘¨β€πŸ’»πŸ‘©β€πŸ’» CALM's new Data and Systems Steward Role is live πŸŽ‰https://crick.wd3.myworkdayjobs.com/External/job/London/Data-and-Systems-Steward_R2551 closing date 8th Feb!

19.01.2026 13:17 πŸ‘ 10 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0
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Introduction to Image Analysis 2026

10 days remaining to apply for the next β€œIntroduction to Image Analysis” workshop in Cardiff (deadline 16th January)!

The course will take place on May 18th-20th, 2026, in collaboration with @royalmicrosoc.bsky.social.

Apply now:
www.rms.org.uk/rms-event-ca...

#bioimageanalysis

06.01.2026 09:54 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1
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Introduction to Image Analysis 2026

✨New Year's resolutions involve learning something new?✨

Then apply for our β€œIntroduction to Image Analysis” workshop in Cardiff in May 2026! Deadline for applications is January 16th.

πŸ”—β¬‡οΈ
www.rms.org.uk/rms-event-ca...

@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social

02.01.2026 14:16 πŸ‘ 10 πŸ” 6 πŸ’¬ 0 πŸ“Œ 1
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πŸ“£ Help spread the word! @globalbioimaging.bsky.social #Imaging4All β€” 3rd Call Open!
Fully funded mobility grants for low/middle-income country researchers to access imaging technologies for experiments and training.
πŸ—“ Deadline: 28 Feb 2026
More info: globalbioimaging.org/i4a

23.12.2025 17:02 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Announcement for the RMS-hosted Introduction to Image Analysis 2026 event at Cardiff University, May 18-20, 2026.

Announcement for the RMS-hosted Introduction to Image Analysis 2026 event at Cardiff University, May 18-20, 2026.

*APPLY NOW* for Introduction to Image Analysis 2026! πŸ˜ƒπŸ”¬

Great workshop designed to empower researchers with the necessary skills and tools to confidently analyse their data.

Apply by Fri, 16 Jan: https://ow.ly/hHRi50XNaG4

22.12.2025 14:20 πŸ‘ 7 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Less than a month to go before applications close for the Introduction to Image Analysis workshop in Cardiff (deadline 16th January)!

@royalmicrosoc.bsky.social

www.rms.org.uk/rms-event-ca...

18.12.2025 11:00 πŸ‘ 11 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
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🌍 Imaging 4 All β€” 3rd Call Open!
Fully funded mobility grants for low/middle-income country researchers to access imaging technologies for experiments and training.
πŸ—“ Deadline: 28 Feb 2026
More info: globalbioimaging.org/i4a
For questions: i4a_support@embl.de
#Imaging4All

15.12.2025 16:19 πŸ‘ 8 πŸ” 5 πŸ’¬ 0 πŸ“Œ 1
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Image Analysis The golden rule of image analysis is β€œgarbage in, garbage out”, so we strongly encourage researchers to come and talk to us about their experimental plans before acquiring data.

We have a ✨new website✨ - go and take a look to meet our team, find out how you can work with us, and see our upcoming training events!

www.crick.ac.uk/research/pla...

12.12.2025 11:00 πŸ‘ 4 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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Ready for another workshop! Today we work with Fiji/ImageJ for an overview of reproducible image analysis and macro writing

05.12.2025 10:05 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

With @david-j-barry.bsky.social, @martinjones.bsky.social, @lankylaste.bsky.social, Tom Slater and Sara Salgueiro Torres

01.12.2025 10:08 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Introduction to Image Analysis 2026

Applications for the next @royalmicrosoc.bsky.social β€œIntroduction to image analysis” workshop are now open!

Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org

www.rms.org.uk/rms-event-ca...

01.12.2025 10:08 πŸ‘ 14 πŸ” 11 πŸ’¬ 1 πŸ“Œ 4

No CBIAS would be complete without an image analysis workshop! Thanks Rocco, @giuliapaci.bsky.social and @makaefer.bsky.social for organising, we had fun helping out with teaching πŸ”¬πŸ’»

28.11.2025 07:45 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

We wrapped up yesterday the 6th edition of the Crick BioImage Analysis Symposium (CBIAS) - look at all those (bio)image analysts!

26.11.2025 10:14 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Our team is busy organising #CBIAS2025 today and tomorrow! Follow the symposium hashtag to hear more about all the interesting discussions happening around all things bioimage analysis

24.11.2025 11:34 πŸ‘ 9 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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UK Bioimaging Launches User Access Fund for Researchers - FocalPlane UK Bioimaging Launches User Access Fund for Researchers - News

UK Bioimaging @bioimaginguk.bsky.social launches User Access Fund for Researchers
Researchers can apply for up to Β£5k for access to bioimaging facilities at @calm-stp.bsky.social, @esric-imaging.bsky.social, KCL, Liverpool, Oxford Brookes & York.

First round deadline: 9 December 2025

17.11.2025 10:25 πŸ‘ 8 πŸ” 7 πŸ’¬ 0 πŸ“Œ 1
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Full house for our monthly Image Analysis Club!

We discussed image data management and next generation file formats for image data with presentations from Ken Ho from the @crick.ac.uk and @dstansby.bsky.social from UCL

17.11.2025 12:03 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Sara from our team has been busy in the last 3 days organising the 8th Crick Data Challenge, a friendly hackathon where attendees tackle research data testing their creativity and coding skills in new ways - congratulations on running a great event! πŸ’»βœ¨

crickdatachallenge.github.io/website/

14.11.2025 14:22 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1
A fluorescent embryo on black text, with the words 
Halfway to I2K: Virtual Tutorials on Image Analysis
November 17-19, 2025
Virtual Conference for beginners to developers
i2kconference.org
Image Credit - "Sweet Embryo",Travis D. Carney, BINA Image Contest 2024

A fluorescent embryo on black text, with the words Halfway to I2K: Virtual Tutorials on Image Analysis November 17-19, 2025 Virtual Conference for beginners to developers i2kconference.org Image Credit - "Sweet Embryo",Travis D. Carney, BINA Image Contest 2024

Just 4 days until the start of I2K and its 33 totally free image analysis tutorials and events! Please share with your "home networks", especially early career researchers - the videos will be amazing and high-impact no matter how many people attend live, BUT (1/x)

13.11.2025 14:32 πŸ‘ 53 πŸ” 48 πŸ’¬ 1 πŸ“Œ 0
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Another week, another training course!

We focused on #Python today, with our internal introductory workshop to image analysis.

Well-done to all attendees! πŸ’»πŸ”¬and thanks to the β€œBioinformatics and Biostatistics” and β€œSoftware Engineering and AI” teams for helping us deliver the course πŸ™

07.11.2025 18:06 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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CBIAS napari workshop 2025

πŸ“’ Enhance your bioimage analysis skills - 2-day hands-on napari workshop.

Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance

πŸ“… Apply by NOW!
www.crick.ac.uk/whats-on/cbi...

07.11.2025 10:49 πŸ‘ 9 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0
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A day in the dark side, from light to electron microscopy image analysis!

We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy

03.11.2025 12:58 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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And it’s a wrap! Thanks to all attendees for your hard work in analysing bioimages with open source software to make science more reproducible. Best of luck for your image analysis adventures!

28.10.2025 21:24 πŸ‘ 9 πŸ” 3 πŸ’¬ 0 πŸ“Œ 2
A seminar room with some people sitting at laptops and chatting

A seminar room with some people sitting at laptops and chatting

All set up and ready to go for our 2-day Introduction to Image Analysis workshop for external attendees at @crick.ac.uk!

With Sara Salgueiro Torres, @david-j-barry.bsky.social, @martinjones.bsky.social, @k-meech.bsky.social, @lankylaste.bsky.social and Cameron Shand

27.10.2025 16:33 πŸ‘ 15 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0