@ayakimovich
I am a group leader at Helmholtz in Görlitz, Germany and an Associate Prof of CS at Uni Wroclaw, Poland. My group is working on Machine Learning for Infection and Disease. Personal account and opinions. Website: ayakimovich.github.io / www.casus.science
Some eight years ago, I shared a slightly embarrassing self help video, hoping more biologists will get into deep learning. With 20k views now, seems like someone might have found it useful. #ThrowbackThursday youtu.be/4UiDG7iC4uY?...
The application is still open under: www.hzdr.de/db/Cms?pNid=... | www.casus.science?page_id=18600 | @casusscience.bsky.social | @hzdr.bsky.social
New Year – new tool for tackling inverse problems in microscopy! TLDR; what’s so new? Fluorescence micrographs are mostly background – stop wasting neurons and check out our sparsity-efficient approach! www.nature.com/articles/s44... | @casusscience.bsky.social | @hzdr.bsky.social
Science:0; Admin: crickets
♥️ Wrocław
Season's greetings from the University of Wroclaw which I passed by to give a talk at the second symposium on #AI ∀, just to be amazed at the plethora of local algos and applications! (and yes this Xmas tree thinks it's better than yours)
There's a fully funded postdoc position available in my group starting next year. Prerequisites: you know that python is not just a snake 🐍, pi is not just a dessert 🎂, policy is more than insurance 📃, proteins and training don't just mean gym 🏋️ to you. DM if interested.
This year for Halloween I will be the Schienenersatzverkehr 👻
Sometimes you just need the flexibility of a #Python library! We present the "Pandas for clonal phenotypes", #PyPlaque aims to do just that! www.nature.com/articles/s41... @hzdr.bsky.social @casusscience.bsky.social 🧪
had a great time talking about #GenAI for improving microscopy at the #FoB @hzdr.bsky.social @casusscience.bsky.social
Always great to be back to #Basel, you might think that staying in hotel 2.7182.. is irrational, but the night rates are quite natural! #FoB here we go!
I'll be speaking at the Festival of Biologics 2025 in Basel next week. If you're interested, pass by and please pick up one of my FREE passes: i.snoball.it/p/IGqAE/l/7
#FestivalOfBiologics @hzdr.bsky.social @casusscience.bsky.social
looking forward to talking about #Microscopy, #GenAI, and virological plaques at the 8th International Symposium on Systems Biology of Microbial Infection in beautiful Jena!
#BuildingBridges in Dresden! Excited to talk about #GenAI for #Microscopy tomorrow! @casusscience.bsky.social @hzdr.bsky.social
Had a blast discussing #microscopy and #AI at BNMI in beautiful Gothenburg!
I am happy to share that I have recently been invited and joined the editorial board of mSphere - a journal of the @asm.org journals.asm.org/journal/msph... @casusscience.bsky.social @hzdr.bsky.social
German railways maintain an unmatched level of backward compatibility! 🧑💻
Drop me a line if you're in sunny 😎 Manchester today/tomorrow @casusscience.bsky.social
Maybe it is time to rethink the big conferences... #AI
After #fluorescencefriday comes #superresolutionsaturday if you still can spell it!
I‘m looking forward to visiting the Center for Advanced Systems Understanding (#CASUS) tomorrow in Görlitz!
I will be giving a talk to CASUS and other @hzdr.bsky.social researchers at 14:00. Details: www.casus.science?page_id=15608
Had a blast talking about #BioMed #AI at the International Urogynecological Association (IUGA) conference in beautiful Barcelona @hzdr.bsky.social @casusscience.bsky.social
🔥Just out @EGPGV’25: Parallel visualization of distributed volume data for non-convex decompositions! @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de And the best: code is contributed upstream 🤩 diglib.eg.org/items/3aed38...
It never ceases to amaze me how much information we can get just by looking at the gradients in #BioImageAnalysis #AI #GenAI Kudos Ivo F. Sbalzarini and the group! 🧪 @mosaicgroup.bsky.social @hzdr.bsky.social @mpi-cbg.de @casusscience.bsky.social onlinelibrary.wiley.com/doi/10.1002/...
Generation of a new #fluorescent reporter #virus could often take years! Here, we propose to use #AI #VirtualStaining to detect infection, by providing a #baseline and a #benchmark for #RV, #HAdV, #IAV, #HSV and #VACV. 🧪@casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41...
Oh hello there @embl.org
I'll be giving a talk and taking part in a panel at @embl.org Heidelberg next Wednesday. Drop me a line if you have time for a ☕ #AI4Science @casusscience.bsky.social @hzdr.bsky.social 🧪
Conceived by Félix d’Herelle, plaque assay remains the cornerstone of #Virology and #Microbiology. In our recent work, we bring it to the era of #AI by collating mobile photos benchmark and proposing an e2e baseline @casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41... 🧪
Was amazing to speak at the good old @uzh-ch.bsky.social
