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Danwei Huangfu

@danweihuangfu

PI @ MSKCC Stem cell biologist passionate about human development, functional genomics and genomic variations affecting human traits. www.mskcc.org/huangfu

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04.12.2024
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Latest posts by Danwei Huangfu @danweihuangfu

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Human DICER1 hotspot mutation induces both loss and gain of miRNA function Nature Structural & Molecular Biology - Jee et al. study a cancer hotspot allele of DICER1 that disrupts RNaseIIIb activity. Beyond ablating 5p hairpin cleavage, 3p passenger strands are...

new Lai lab paper @natsmb.nature.com! Dicer is specifically mutated in cancer, but we don't fully understand its molecular/reg impacts. with @danweihuangfu.bsky.social, we characterized the first knockin Dicer hotspot in hESCs, and found unexpected defects in miRNA biogenesis! 🧬 1/4

rdcu.be/eOc0q

10.11.2025 16:43 πŸ‘ 47 πŸ” 10 πŸ’¬ 5 πŸ“Œ 0
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Check out ISSCR's society journal, Stem Cell Reports!

As a member of the editorial board for @stemcellreports.bsky.social, I am excited to share that we are looking for submissions in the field of stem cell research! I invite you to submit your work for consideration. invt.io/1bxbz2ji4db @isscr.org #stemcell #DevBio #hPSCs #regeneration

03.10.2025 21:42 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Developmental biologist Maria Jasin wins the 2025 Pearl Meister Greengard Prize - News Maria Jasin, whose fundamental research on repair of damaged DNA in cells has transformed our understanding of cancers linked to inherited gene mutations, has been selected as the 2025 recipient of the Pearl Meister Greengard Prize. Awarded annually by ...

Maria Jasin, whose fundamental research on repair of damaged DNA in cells has transformed our understanding of cancers linked to inherited gene mutations, has been selected as the 2025 recipient of the Pearl Meister Greengard Prize. Congratulations! #WomenInScience

12.09.2025 13:24 πŸ‘ 23 πŸ” 6 πŸ’¬ 1 πŸ“Œ 2
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Now accepting applications for our 2026 Cancer Biology & Cancer Engineering programs. Aspiring scientists & engineers will solve fundamental problems in biology & conduct research & develop technology that will help understand, diagnose, & treat cancer.
bit.ly/3WUiuo1

11.09.2025 21:04 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
New Discoveries and Honors in Cancer Research | Damon Runyon

Congratulations to #MSKPostdoc Denis Torre
on being awarded the Damon Runyon Fellowship! πŸ‘πŸ‘πŸ‘
Keep up the good work!
@damonrunyon.org @mskeducation.bsky.social

05.09.2025 21:26 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 1
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πŸ“’ Interested in #AI + #PrecisionMedicine?
The NIH PRIMED-AI program has forecasted several new #funding opportunities β€” covering AI frameworks, validation centers, academic-industry partnerships & more!
πŸ“ FOAs expected soon β€” stay tuned & start planning!
πŸ”— More information: dknet.org/about/dknetn...

11.06.2025 22:45 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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A year of stem cell and developmental biology In recent years, the field of stem cell and developmental biology has seen remarkable breakthroughs that have deepened our understanding of how organisms ...

Traveling to the @isscr.org meeting in HK soon? Feeling like browsing through important #StemCell work published during the past year on your way there? Take a look at our collection of papers published across @natureportfolio.nature.com during the past 12 months!

www.nature.com/collections/...

07.06.2025 11:52 πŸ‘ 21 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0

btw, there's a curious tandem duplication event found in certain primates including humans but not in mice at the NANOG locus. #stemcells #hPSCs

02.06.2025 23:22 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Jielin Yan (recently graduated πŸŽ‰πŸŽ‰) led the discovery of two enhancers regulating NANOG expression in #hESCs via a #CRISPRi screen. It's part of our larger effort characterizing the functions of enhancers and noncoding variant in development and disease @igvfconsortium.bsky.social

02.06.2025 23:22 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Discovery of NANOG enhancers and their essential roles in self-renewal and differentiation in human embryonic stem cells Huangfu and colleagues identified two NANOG enhancers from a CRISPR interference (CRISPRi) screen in hESCs. Heterozygous deletions of either enhancer significantly lowered NANOG expression, reduced hE...

Discovery of NANOG enhancers and their essential roles in self-renewal and differentiation in human embryonic stem cells: Stem Cell Reports www.cell.com/stem-cell-re... β€ͺ

02.06.2025 23:22 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Lab hiking at Mount Beacon. Great views of the Hudson, a few detours off-trail (in true scientific spirit), and just the right amount of rain. many thanks to Denis Torre for organizing. A beautiful sendoff for lab members (Jielin Yan and Sharon Adeniyi) soon setting off on their own paths.

25.05.2025 14:42 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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πŸŽ“ Congratulations to the 14 scientists who graduated from the Gerstner Sloan Kettering Graduate School of Biomedical Sciences (GSK) this year!β€―

Learn more about this year's GSK graduates and their accomplishments: bit.ly/3SGB1T8

19.05.2025 20:55 πŸ‘ 26 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Hosted Ben Stanger for a seminar and in addition to a great presentation (I'm expecting that!), I also received a surprise!
Thanks @benstanger01.bsky.social

16.05.2025 02:15 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Congratulations to our 2025 graduates! So inspired @carolynbertozzi.bskyverified.social commencement speech. @mskeducation.bsky.social

Congratulations to Dr. Jielin Yan and Dr. Samual Kaplan. So very proud of your accomplishments!

15.05.2025 19:53 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Atlas of Variant Effects 2030 Roadmap: resolving human variants of uncertain significance At the Clinical Atlas of Variant Effects meeting (CLAVE meeting, July 2024, Pittsburgh USA), we developed recommendations for a draft atlas that can be realized by 2030, with a focus on empowering gen...

Our "Atlas of Variant Effects 2030 Roadmap" is live: zenodo.org/records/1542...

1/n

15.05.2025 15:44 πŸ‘ 36 πŸ” 27 πŸ’¬ 1 πŸ“Œ 0

One of these studies from @mskcancercenter.bsky.social and the result of the long term commitment to basic stem cell investigation by Lorenz Studer and Viviane Tabar at MSK. Very exciting!

17.04.2025 10:45 πŸ‘ 5 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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Calling all students in NIDDK relevant disease research fields! πŸ”¬πŸ“Š Ready to explore data management, #FAIR data, rigor and reproducibility, and #datascience? The dkNET Summer of Data program offers training to boost your research skills.
Apply now! ✨ dknet.org/about/Summer...

13.03.2025 01:33 πŸ‘ 2 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Bing Ren Appointed Scientific Director and Chief Executive Officer of the New York Genome Center - March 27, 2025 Read about Bing Ren Appointed Scientific Director and Chief Executive Officer of the New York Genome Center at the New York Genome Center on March 27, 2025

exciting news for our scientific community! www.nygenome.org/news-events/...

27.03.2025 19:26 πŸ‘ 65 πŸ” 10 πŸ’¬ 4 πŸ“Œ 0
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Can you explain your doctoral research through interpretive dance?

The deadline for submissions to the 17th annual #DanceYourPhD competition is this week. Submit by 28 March for a chance to win $2000: scim.ag/4gKMnz9

24.03.2025 15:40 πŸ‘ 85 πŸ” 26 πŸ’¬ 6 πŸ“Œ 9

if a non-monotonic response is intriguing to you, stay tuned for another preprint from Jielin on gene dosage responses ...

21.03.2025 02:28 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Congratulations to Dr. Jielin Yan #GSK for successfully defending her PhD dissertation! And a refreshing perspective on a non-monotonic relationship between academic freedom and scientific growth. Check out her preprint here on the discovery of NANOG enhancers www.biorxiv.org/content/10.1....

21.03.2025 02:26 πŸ‘ 6 πŸ” 0 πŸ’¬ 1 πŸ“Œ 1
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Safeguarding the future of biomedical science in the United States NIH’s abrupt decision to cap indirect cost reimbursement at 15% threatens the critical infrastructure supporting groundbreaking biomedical research in the United States. This policy jeopardizes Americ...

Tom Maniatis coming in hot in @CellCellPress
to spell out in no uncertain terms what cutting indirect cost rates to 15% will cost science.

And a call to action: "A united front...is essential to preventing this devastating policy from taking effect." πŸ’―
www.cell.com/cell/fulltex...

01.03.2025 21:29 πŸ‘ 202 πŸ” 101 πŸ’¬ 6 πŸ“Œ 5
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Francis Collins, the NIH Director for 12 years, led the Human Genome Project and other NIH efforts for 32 years, resigned today. Key words from his resignation letter
www.nytimes.com/2025/03/01/u...

01.03.2025 18:07 πŸ‘ 3134 πŸ” 1385 πŸ’¬ 61 πŸ“Œ 94
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The ISSCR Signs on to Coalition Letter in Support of NIH β€” International Society for Stem Cell Research The ISSCR joined with Research!America, hundreds of biomedical research organizations, and thousands of private citizens from the U.S. scientific community to urge House and Senate appropriators to av...

#ISSCR joined hundreds of biomedical research organizations to urge House and Senate appropriators to support robust funding for NIH & avoid drastic measures that will slow scientific progress and weaken the U.S. research ecosystem. www.isscr.org/isscr-news/t...

26.02.2025 20:27 πŸ‘ 11 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0
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Graduate Reductions Across Biomedical Sciences (2025)

I created a brief spreadsheet of reductions I've heard of so far. Any additions you know of (especially if you have the links/receipts) would be great: docs.google.com/spreadsheets...

22.02.2025 13:23 πŸ‘ 461 πŸ” 334 πŸ’¬ 38 πŸ“Œ 53
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A nucleosome switch primes hepatitis B virus infection A reconstituted cccDNA platform facilitated the discovery of an early chromatinization event that promotes transcription of the hepatitis B virus (HBV) regulatory X gene. The use of a small-molecule c...

I am extremely proud to see our work about Hepatitis B now published in @cellpress.bsky.social

From basic research to identifying the key step of infection & a potential first drug for curing this devastating disease. This has been an incredible journey.🧡

www.cell.com/cell/fulltex...

21.02.2025 17:31 πŸ‘ 148 πŸ” 35 πŸ’¬ 7 πŸ“Œ 3
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MorPhiC Consortium: towards functional characterization of all human genes - Nature This Perspective discusses strategies and challenges for the Molecular Phenotypes of Null Alleles in Cells (MorPhiC) Consortium as it aims to catalogue the molecular and cellular phenotypes associated...

πŸ’Š Drug development relies on understanding gene function.

However, we still don’t know what most genes actually do.

Excited to be part of the #MorPhiC consortium, working to close this knowledge gap. #ScienceMatters #CRISPR #FunctionalGenomics #iPSC

Check out πŸ‘‡
www.nature.com/articles/s41...

20.02.2025 05:10 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
How a Canadian scientist and a venomous lizard helped pave the way for Ozempic - National | Globalnews.ca In 1984, Dr. Daniel Drucker, an endocrinologist from the University of Toronto, discovered a hormone that helped pave the way for popular diabetes drugs such as Ozempic.

Whenever you hear someone sneer about scientific research that seems useless to them β€” β€œthey’re studying the spit of lizards?!” β€” remind them that’s exactly how we got Ozempic.

globalnews.ca/news/9793403...

09.02.2025 17:38 πŸ‘ 30114 πŸ” 7860 πŸ’¬ 516 πŸ“Œ 267
NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD

1. Today the NIH director issued a new directive slashing overhead rates to 15%.

I want to provide some context on what that means and why it matters.

grants.nih.gov/grants/guide...

08.02.2025 00:18 πŸ‘ 7034 πŸ” 4103 πŸ’¬ 256 πŸ“Œ 902
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We've summarised the landscape of human pluripotent stem cell trials worldwide in a review in Cell Stem Cell. Fun fact: Over 1200 patients have to date received treatment with hPSC products in 116 different trials, and more than 100 billion hPSC-derived cells have been dosed! doi.org/10.1016/j.st...

07.01.2025 23:16 πŸ‘ 22 πŸ” 10 πŸ’¬ 0 πŸ“Œ 1