Shingo Miyauchi

🟢Visual Omics Series 14🟢 Do the same fungal species behave similarly across distant locations regardless of environment? We examined through multi-omics analysis. Colour theme inspired by Claude Monet's Water Lilies. @jgi.doe.gov @oistedu.bsky.social 🔗https://shorturl.at/fp5j9
#fungi #genomics 🍄

Our preprint on Agaricales comparative genomics is out! 🍄 122 genomes reveal how grassland fungi evolved diverse strategies: Ectomycorrhizal species lost plant-degrading enzymes while saprotrophs expanded them. 👉https://shorturl.at/shWPp @fmartin54.bsky.social #Fungi #Genomics #SoilEcology

Two Billion Years of Fungal Evolution: How Symbiosis Shaped Earth's Most Diverse Kingdom Fungi emerged approximately 2.4 billion years ago in primeval seas, likely colonising land before plants around one billion years ago

Educational short read on 2 billion years of fungal evolution from ancestral marine flagellates to mushrooms.
www.mycostories.com/post/two-bil... #fungi #evolution #symbiosis #mycorrhiza 🍄

The role of ectomycorrhizal functional diversity in mediating soil carbon cycling under global change Click on the article title to read more.

A fun commentary with @christinakaiser.bsky.social inspired by a very cool paper in New Phyt by @fungidownunder.bsky.social et al. showing that EcM fungal functional traits affect soil C responses to elevated CO2. EcM species and traits really matter!

nph.onlinelibrary.wiley.com/doi/10.1111/...

🌟Call for Papers: Genomics of Symbiosis🌟 I am a guest editor for BMC Genomics. Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/... #BMCgenomics

Looking forward to visiting Zhejiang University …

My Chinese colleagues are keeping me busy 😉

🔶Visual Omics Series 13🔶 Out Now #CurrentBiology Decipher the unique genomes of morels, truffles, and their toxic kin, styled with Gustav Klimt's artistry. @fmartin54.bsky.social @oistedu.bsky.social @mycocosm.bsky.social 👉 shorturl.at/CSZDP 🧪🧬🖥️ #Genomics #Fungi #DataViz

Pangeneric analyses reveal the divergent genome
evolution and ecologies between morels and truffles
in the Morchellaceae published in
@currentbiology.bsky.social

1/n
Photo: M. Vulgaris (Ph Clowez)

Arbres, secrets de géants - Prévente > Boutique - Salamandre > Boutique - Salamandre Le livre Un beau livre très soigné qui dévoile la vie intime de vingt-quatre essences incontournables de nos régions. Chê

Un beau livre qui dévoile la vie intime d’essences incontournables de nos régions : Chêne, tilleul, sapin, mélèze, frêne, saule… des portraits personnels illustrant combien chaque arbre est un monde à part entière. Superbement illustré par Emmanuelle Boîtier …
boutique.salamandre.org/arbres-secre...

Interested in improving soil biodiversity and promote sustainable forestry?

Think about applying for a PhD to work with @fungidownunder.bsky.social and @westsyduhie.bsky.social
industrial partner Rhizocore, seeking to improve mycorrhizal diversity in plantation forestry

tinyurl.com/jxcdhp3p

Apoplastic barriers are essential for nodule formation and nitrogen fixation in Lotus japonicus Establishment of the apoplastic root barrier known as the Casparian strip occurs early in root development. In legumes, this area overlaps with nitrogen-fixing nodule formation, which raises the possi...

Finally!
Im so excited to present to culmination of many years of work from the fantastic Defeng Shen and some great collaborators. For details, I have made a digested thread below, but if you are more interested feel free to reach out (and read the paper of course).
www.science.org/doi/10.1126/...

A fusarioid fungus forms mutualistic interactions with poplar trees that resemble ectomycorrhizal symbiosis Fusarium species, recognised as global priority pathogens, frequently induce severe diseases in crops; however, certain species exhibit alternative symbiotic lifestyles and are either non-pathogenic o...

I’m thrilled to let you now that our paper on a Fusarium forming ectomycorrhiza-like interactions was published in IM Fungus:
doi.org/10.3897/imaf...
A great collaboration with Zhilin Yuan'steam!

🌟Call for Papers: Genomics of Symbiosis in BMC Genomics🌟 Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/... #BMCGenomics @biomedcentral.bsky.social 🧪🧬🖥️

Exploring “A travelling-wave strategy for plant–fungal trade” YouTube video by SPUN

Learn about our new research uncovering #fungi and plant trade systems, and hear from 3 of the authors. Watch the video: youtu.be/tOUhu2tXIWg?...

A travelling-wave strategy for plant-fungal trade. An image of a microscopic view of fungi. Nature logo.

Our newest research on plant-fungal trade published today in @nature.com.

The work, led by scientists from Vrije Universiteit, Princeton University, SPUN & AMOLF combines robotics, mycology & biophysics to reveal underground supply-chain dynamics.

Open access:
www.nature.com/articles/s41...

An exciting exploration of morel mitogenomes with Tao Gang, Shingo and the JGI team!

🟢Visual Omics Series 12🟢 Out now! Explore the mitochondrial genomes of fascinating Morchella species through a retro 80s video game vibe. @fmartin54.bsky.social @imafungus.pensoft.net #Genomics #Fungi #DataViz 👉https://shorturl.at/KPqyH 🧪🧬🖥️

Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota - Nature Plants The authors show that immunosuppression is highly conserved in the bacterial order Xanthomonadales. This feature, which preceded their specialization as host-adapted pathogens, probably contributes to...

Happy to be collaborating on this study! Congrats to all the co-authors on this achievement. 🎉
www.nature.com/articles/s41...

Is it possible for me to join the group?

Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota) Lorchels, also known as false morels (Gyromitra sensu lato), are iconic due to their brain-shaped mushrooms and production of gyromitrin, a deadly myc…

Thrilled to see our paper "Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)" released online. An amazing collaboration with Alden Dirks, Tim James and many others ...
www.sciencedirect.com/science/arti...

Is it possible for me to be included?🙏

🧪

🟡 Visual Omics Series 11 🟡 Published now! Discover genomic signatures in ectomycorrhizal fungi through a comparative analysis of 63 ECM fungi, uniquely illustrated with Andy Warhol-inspired art. 🧬🖥️ @fmartin54.bsky.social #Evolution #Genomics #Fungi #DataViz 👉 shorturl.at/xqUBK

A great collection of papers and a superbe illustration of the mycorrhizal networks from Florian Gadenne on the cover page 👍

Thank you very much for the reply. I found it a bit ambiguous, but I'm looking forward to reviewing your manuscript. 😀

🧬 🖥️

In addition to applied statistics, I have another repository on #DataVisualization: "quick data vis" (github.com/cxli233/Quic...). It used to be under "Online_R_learning" but now it has its own repository on GitHub. I have used this content to teach 1st year grad students for 3 years.

Can I join your team?

#SciArt 🐡