Icy

📌 Tracking cell dynamics just got smarter!
We use Bayesian linking algorithms — KOFT and SKT — implemented in our ByoTrack 🐍 Python library.
Kalman filters + optical flow for links & mitosis detection.
[PDF] celltrackingchallenge.net
#CellTracking #Python #KalmanFilter #OpticalFlow #OpenScience

⏰ We've just passed the 250 pre-registration mark for #Mifobio2025 !

There's only one week left before the deadline, which won't be extended given the current numbers ! 👉 imabio-cnrs.fr/mifobio-2025...

@cnrsingenierie.bsky.social @cnrsbiologie.bsky.social @cnrs-inist.bsky.social @cnrs.fr

Bioimage Analysis – Retour sur le Cours Pasteur NEUBIAS YouTube video by Institut Pasteur EDUCATION

🔬Le Cours Pasteur NEUBIAS propose une formation avancée en analyse d’images biologiques intégrant théorie, pratique et IA. Lina El Hajji, post-doc à Sorbonne Université, partage son expérience. La prochaine édition aura lieu en juin 2026 sous le nom « Advanced Bioimage Analysis with AI »

🚨Paper alert!
🚀 We presented SINETRA at #ISBI2025 in Houston
A new simulator for generating realistic 2D/3D neuron tracking data in moving animals like Hydra vulgaris
🧠 Helps test and improve tracking algorithms under tough conditions
📄 dx.doi.org/10.1109/ISBI...
#celltracking #syntheticdata #ISBI

Exciting news! 🎉 We propose Spatiopath, a null-hypothesis framework for cell-cell & cell-tumor interactions that distinguishes statistically significant immune cell associations from random ones.📊🔬
Check it out:😊 www.nature.com/articles/s41...
#statistics #immunology #oncology

👉To classify the dynamic behaviors governing biological particles, we developed a neural network model based on geometric trajectory descriptors and a framework to robustly detect dynamic changes in compound trajectories.
#simulation #activationpathwayofreceptorsCCR5
👉 hal.science/hal-04870375v1

The Pasteur microscopy course #PAFM is running full speed!

The stiffness of cells and their nuclei is a biomarker of several pathologies, yet is usually reduced to a single value. In our last paper, we propose a method to estimate heterogeneous maps of stiffness inside freely moving cells using only fluorescence imaging.
ieeexplore.ieee.org/document/107...

Spot detection @Icy_bioimaging

PI Kinase-EhGEF2-EhRho5 axis contributes to LPA stimulated macropinocytosis in Entamoeba histolytica Author summary Entamoeba histolytica is an enteric parasite in humans, which leads to various pathologies like dysentery, diarrhoea and abscess formation. Host cells are known to secrete chemokines an...

Better understand macropinocytosis of Entamoeba histolytica: Drink or Drive
@Icy_BioImaging

journals.plos.org/plospathogen...

JDLL: a library to run deep learning models on Java bioimage informatics platforms.
@jytinevez.bsky.social @deepIcy_IP @deepImageJ

www.nature.com/articles/s41...

👉 Learn more: journals.plos.org/plospathogen...

💡 BioFlow is an image-based method able to extract velocities, pressure and forces inside living cells observed in fluorescence microscopy 🔬🖥️
icy.bioimageanalysis.org/plugin/biofl...
👉 The lateral movement of fan-shaped amoeboid cells is not pressure-driven ‼️