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Tom Samuels

@thomashasamuels

NIHR Academic Clinical Fellow in Infectious Diseases @ UCL and soon to be NIHR Doctoral Fellow @ UCL. Infection diagnostics, data science and predictive modelling.

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01.09.2024
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Latest posts by Tom Samuels @thomashasamuels

A novel personalised mortality risk prediction tool for HIV-associated cryptococcal meningitis could lead to future treatment stratification trials - less intensive regimens for less unwell patients? Our new manuscript.
www.thelancet.com/journals/lan...
#IDsky #HIV #GlobalHealth #meningitis #fungal

30.04.2025 20:00 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Many thanks to all our co-authors on the paper for all their hard work and support!
8/8

30.04.2025 19:59 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
PERISKOPE-CM – Home

The Periskope-CM models accurately predict mortality risk in patients with HIV-associated CM and show promise as a tool to direct future treatment stratification trials. They are available to use for research purposes at the following link: www.periskope.org/cm/
7/8

30.04.2025 19:59 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Explorative analysis of treatment effect demonstrated a trend towards improved outcomes in patients with low predicted risk who received the single high dose liposomal amphotericin B, compared with standard amphotericin B deoxycholate + flucytosine.
6/8

30.04.2025 19:59 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Calibration, the measure of how well model predictions matched observed events, was reasonable for both regression models, although demonstrated some overprediction of risk at high-risk ranges, where training data was sparser. The machine learning model demonstrated miscalibration.
5/8

30.04.2025 19:59 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Both regression models discriminated well between patients who met the outcome and those who did not in held out validation data. The machine learning model did not improve performance.
4/8

30.04.2025 19:59 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

We developed multivariable logistic regression models to predict 2-week mortality on data from the ACTA www.nejm.org/doi/full/10.... and Ambition www.nejm.org/doi/full/10.... trials using best-practice methods, comparing them head-to-head with a machine learning model trained on the same data.
3/8

30.04.2025 19:59 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Cryptococcal meningitis (CM) is a major driver of global HIV-related deaths. Treatment is intensive and toxic, so stratifying patients by disease severity may allow for more targeted therapy – less intensive regimens for less unwell patients.
2/8

30.04.2025 19:59 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Lancet

Very excited to share our new piece of work in the Lancet Global Health @lancetgh.bsky.social – Periskope-CM, a set of personalised risk prediction tools for HIV-associated cryptococcal meningitis mortality: www.thelancet.com/journals/lan...
#IDsky #HIV #GlobalHealth #meningitis #fungal
1/8

30.04.2025 19:59 πŸ‘ 3 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1

Many thanks to all our co-authors on the paper for all their hard work and support!
8/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
PERISKOPE-CM – Home

The Periskope-CM models accurately predict mortality risk in patients with HIV-associated CM and show promise as a tool to direct future treatment stratification trials. They are available to use for research purposes at the following link: www.periskope.org/cm/
7/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Post image

Explorative analysis of treatment effect demonstrated a trend towards improved outcomes in patients with low predicted risk who received the single high dose liposomal amphotericin B, compared with standard amphotericin B deoxycholate + flucytosine.
6/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Post image

Calibration, the measure of how well model predictions matched observed events, was reasonable for both regression models, although demonstrated some overprediction of risk at high-risk ranges, where training data was sparser. The machine learning model demonstrated miscalibration.
5/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Post image

Both regression models discriminated well between patients who met the outcome and those who did not in held out validation data. The machine learning model did not improve performance.
4/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

We developed multivariable logistic regression models to predict 2-week mortality on data from the ACTA www.nejm.org/doi/full/10.... and Ambition www.nejm.org/doi/full/10.... trials using best-practice methods, comparing them head-to-head with a machine learning model trained on the same data.
3/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Cryptococcal meningitis (CM) is a major driver of global HIV-related deaths. Treatment is intensive and toxic, so stratifying patients by disease severity may allow for more targeted therapy – less intensive regimens for less unwell patients.
2/8

30.04.2025 17:21 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Fantastic piece of work by @richarddriley.bsky.social and others - this is the next step we need to be taking when we report the performance of clinical prediction models.

16.02.2025 13:24 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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New research article in The Lancet Microbe

Assessment of MpoxPlex, a high-throughput and multiplexed immunoassay: a diagnostic accuracy study

www.thelancet.com/journals/lan...

#IDSky #ClinMicro #ViroSky #Mpox #OpenAccess #OA

17.01.2025 14:18 πŸ‘ 4 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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πŸ†•πŸ’« Analysis of AMBITION RCT
Individuals started ART w/in 2 wks before presenting with cryptococcal meningitis, presumably active cryptococcal infection, have higher mortality, whereas those presenting on ART for > =2 wks have a more favorable prognosis #idsky
academic.oup.com/cid/advance-...

15.01.2025 15:38 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Interesting to #IDSky & #ClinMicro

15.01.2025 08:33 πŸ‘ 9 πŸ” 4 πŸ’¬ 0 πŸ“Œ 1
Preview
Getting Ready for More mRNA Vaccine Fear-Mongering: A Compendium - Absolutely Maybe Recently, I wrote about a depressingly successful campaign against the introduction of a next generation Covid vaccine in Japan. It is a…

Ever wonder about the basis for fear-mongering & conspiracy theories about mRNA vax? Wish you had a place to go when someone cites "proof"?

I've got you covered! In my latest @plos.org I buckle up for the waves of anti-vax muck likely to come in 2025. 1/2

absolutelymaybe.plos.org/2024/12/28/g...

28.12.2024 07:06 πŸ‘ 173 πŸ” 77 πŸ’¬ 15 πŸ“Œ 11
Preview
New dengue vaccine for UK travellers: recommended only for those with a previous infection Dengue virus is the most abundant and rapidly spreading arbovirus worldwide. 390Β million dengue infections are estimated to occur annually, of which approximately 25% are symptomatic.1 Climate change and urbanisation have contributed to the spread of the vectors (Aedes mosquitoes) and enabled sustained transmission in regions that were previously not affected.2 Although the burden of the disease is largely confined to Asia and central or south America, autochthonous spread has been increasing in central and southern Europe.

Great piece in the Lancet Microbe from colleagues at HTD and RIPL about the vaccinating for dengue in travellers! πŸ‘πŸ»

www.thelancet.com/journals/lan...

Full details of how to go about it all for Uk travellers in the excellent Green Book travelhealthpro.org.uk/media_lib/ml...

#IDSky #ViroSky

28.12.2024 10:04 πŸ‘ 18 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0

Potential delivery of some antibiotics too?

Clearly there may be some significant issues with volume of fluid to be delivered subcutaneously!
#OPAT #IDSky #clinmicro #AMR

18.12.2024 14:36 πŸ‘ 11 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
Fatal Case of Crimean-Congo Hemorrhagic Fever, Portugal, 2024 Fatal Crimean-Congo Hemorrhagic Fever, Portugal

Fatal Case of Crimean-Congo Hemorrhagic Fever, Portugal, 2024

#IDSky #EpiSky

18.12.2024 14:38 πŸ‘ 29 πŸ” 17 πŸ’¬ 1 πŸ“Œ 2
Redirecting

Our letter about HLH in murine typhus has just been published in the Journal of Infection! doi.org/10.1016/j.ji.... Many thanks to my co-authors, with a special mention to Sophie Skarbek, Sana Sharrack, and @jamesmeiring.bsky.social for all your efforts πŸ™

06.12.2024 17:20 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Hi @mattfrieman.bsky.social - TL;DR - our key conceptual advance is that different blood transcriptional biomarkers discriminate early and late phases of infection as a result of cell-specific epigenetic regulation and have important translational applications for respiratory virus infections:

01.12.2024 21:38 πŸ‘ 0 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Check out our paper on RNA biomarkers in COVID-19

MX1 expression occurred early in infection before PCR detection…potential role to stratify treatment

#IDSky

01.12.2024 22:21 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

The problem is, the length of treatment in the control arm of these trials is far longer than is currently recommended in most guidance. NICE guidance in the UK for CAP is 5 days. PCT is just guiding you to do the same thing that robust guidance/RCT evidence is already telling you. Not a useful test

01.12.2024 20:48 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Preview
Fight or Flight β€” Facing the Marburg Outbreak in Rwanda | NEJM Having diagnosed two ICU patients with the first known cases of Marburg virus disease in Rwanda, a physician must prioritize limiting spread, despite pleas for transfer from the patients’ families.

Poignant frontline perspective of a #Rwandan physician responding to the recent #marburg outbreak. It is well worth a read. We are are two weeks into the 42 day countdown to declaring the outbreak over🀞🏾. These brave HCPs kept us safe. #medsky #idsky πŸ§ͺ
www.nejm.org/doi/full/10....

21.11.2024 02:19 πŸ‘ 334 πŸ” 89 πŸ’¬ 9 πŸ“Œ 4

Fantastic session at #Medplus in the @rcphysicians.bsky.social today chairing cases from the Imported Fever Service with Sarah Logan. Thanks a bunch to all our panelists and speakers, you were all brilliant. If you’re at Med+ or joining online and missed it, do watch it back!

21.11.2024 19:06 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0