Dr Cyril Pernet's Avatar

Dr Cyril Pernet

@cyrilrpernet

NeuroInformatics, NeuroImaging, Stats #openscience #opendata #publicdata -- leading https://publicneuro.eu/ put my stuff on https://github.com/CPernet/ see also http://cpernet.github.io --- pour mes amis francophone aussi: https://lavieen202025.github.io/

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29.11.2023
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Latest posts by Dr Cyril Pernet @cyrilrpernet

A Day in the Life of an Ensh*ttificator
A Day in the Life of an Ensh*ttificator YouTube video by ForbrukerrΓ₯det - Norwegian Consumer Council

The Norwegian Consumer Council with an amazing video on enshittification and how to resist it.

www.youtube.com/watch?v=T4Up...

08.03.2026 10:27 πŸ‘ 106 πŸ” 47 πŸ’¬ 3 πŸ“Œ 13

just make sure the different colors have different luminance ! possibly colorbling friendly cmap_12, name, desc = make_newmap('12_colours') # 12 distinct colours friendly from github.com/CPernet/brai...

07.03.2026 14:12 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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AI is threatening science jobs. Which ones are most at risk? Data-analysis and modelling positions are already becoming obsolete, but hands-on experimentalists can breathe easy for now.

AI is threatening science jobs. Which ones are most at risk? www.nature.com/articles/d41...

seems to me it is a misunderstanding of what data analysis in research is about - even the best coder in the world cannot do it if the science being done is not understood, domain knowledge remains key

06.03.2026 07:09 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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main thing for today done 😍

@ohbmofficial.bsky.social #OHBM2026

05.03.2026 09:38 πŸ‘ 6 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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I couldn't find a tool to plot different #neuroimaging data in one consistent style, so I made one! Meet yabplot (yet another brain plot) - a #Python package for (sub)cortex & tracts.🧠
- Simple API
- Built-in atlases
- Custom atlas support
πŸ”— github.com/teanijarv/ya... (drop a ⭐️!)

02.03.2026 13:37 πŸ‘ 57 πŸ” 22 πŸ’¬ 1 πŸ“Œ 0
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Causal parametric language mapping with electrical stimulation during awake neurosurgery Temporal parameters of direct electrical stimulation reveal dissociable stages of language processing.

Beautiful new work on cortical stimulation mapping moving beyond traditional binary classifications of causal functional classifications.

www.science.org/doi/10.1126/...

02.03.2026 00:59 πŸ‘ 9 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0
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Join us on 20 March (16:30–18:00 CET) to discuss #Neurotechnology, brain data protection & why #PrivacyByDesign must guide innovation.

Free registration (mandatory) ⬇️
ebrains.eu/news-and-eve...

27.02.2026 09:40 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Do you ever argue with your LLM chatbot? I found myself writing something back, and then I'm like 'wtf', just give it another rule to follow πŸ˜…

27.02.2026 07:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

1) participants' metadata, in particular demographics, are a bigger risk for privacy 2) we have created a new metric k-global that gives you the relative importance of each variable for anonymity and 3) BIDS compliant little python package to help everyone with data curation.

21.02.2026 19:20 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Assessing metadata privacy in neuroimaging Abstract. The ethical and legal imperative to share research data without causing harm requires careful attention to privacy risks. While mounting evidence demonstrates that data sharing benefits scie...

It's out! direct.mit.edu/imag/article...

21.02.2026 06:55 πŸ‘ 8 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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"You see what you look for, and you look for what you know."

We are proud to release FOCUS: a 100 ΞΌm deformable human subcortical atlas precisely registered to MNI space.

www.biorxiv.org/content/10.6...

20.02.2026 12:28 πŸ‘ 86 πŸ” 39 πŸ’¬ 4 πŸ“Œ 1
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Nielsen et al. present an open, vendor-neutral BOLD SMS-EPI protocol tailored for multi-site fMRI studies: doi.org/10.52294/001...

@ohbmossig.bsky.social @ohbmofficial.bsky.social

#OpenDatasets #SpecialIssue

13.02.2026 15:04 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 2
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Next Stops for OHBM: Toronto, Canada in 2027 and Yokohama, Japan in 2028 β€” OHBM Communications We are thrilled to announce the locations for our next two upcoming Annual Meetings! The 2027 OHBM Annual Meeting will be held in Toronto, Canada, followed by the 2028 OHBM Annual Meeting in Yokohama,...

Future @ohbmofficial.bsky.social meeting dates just annouced:

* 2027 - Toronto, Canada
* 2028 - Yokohama, Japan

www.ohbm-com.com/blog/futurem...

17.02.2026 15:01 πŸ‘ 28 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0

no one should follow blindly a procedure not thinking about it -- some philosophical value in that respect, but not what anti-registration people think this is about .. (I can already see misuse in citations)

17.02.2026 05:46 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Is scientific reform an unwinnable arms race? Methodological improvements should, in theory, mean more robust evidence and inference, and more rapid advances in knowledge. However, these methods are often subsequently used in the pursuit of…

Improvements to methods should lead to more robust evidence and more rapid advances in knowledge. In their Perspective, Marcus MunafΓ² & @mendelrandom.bsky.social look at why this hasn't been the case and what can be done about it #AcademicSky πŸ§ͺ

13.02.2026 08:55 πŸ‘ 8 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

apparently there is a cool paper for Risk Assessment using different privacy metrics that's coming out in @imagingneurosci.bsky.social πŸ˜…

10.02.2026 20:10 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

hey Alex, if you can send me a copy that would be great (no neuron access) thx

10.02.2026 09:15 πŸ‘ 0 πŸ” 0 πŸ’¬ 2 πŸ“Œ 0
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Interested in cortical wave dynamics? Check out our review on the physics, physiology, and psychology of cortical waves led by J Cruddas with @jchrispang.bsky.social, out now in
@cp-neuron.bsky.social:

www.sciencedirect.com/science/arti...

09.02.2026 23:56 πŸ‘ 48 πŸ” 20 πŸ’¬ 1 πŸ“Œ 0
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Frontiers | Structure–function relationships across scales: implications for atlases Neuroscience aims to understand how the structural and functional organization of the brain relates to behavior. Structural studies at the cellular level est...

I wrote an perspectives piece relevant to the structural atlasing endeavors. Structural atlases are not the end of the story. This perspective calls for models that take into account the flexible functional organization within this fixed architecture.

www.frontiersin.org/journals/neu...

09.02.2026 13:53 πŸ‘ 18 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0
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SPMβ€”30Β years and beyond Abstract. This paper marks the 30th anniversary of the Statistical Parametric Mapping (SPM) software and the journal Cerebral Cortex: two modest milestones

β€œFrom mapping to explaining brain function: the generative theoretical ambition of SPM” - our article in Cerebral Cortex forms part of our 30(ish) year celebration of SPM.

academic.oup.com/cercor/artic...

15.09.2025 07:14 πŸ‘ 13 πŸ” 5 πŸ’¬ 0 πŸ“Œ 3

''We show that BOLD signal variability represents a spatially heterogeneous, central property of multi-scale multi-modal brain organization'' cool

02.02.2026 20:11 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Left:  Pathways involved in brain energy metabolism. Energy metabolism refers to processes involved in energy production from nutrient molecules. Glucose is the main energy source in the brain under normal physiological conditions. Glucose entering brain cells can be utilized in three parallel pathways. It can be processed through glycolysis to produce 2 ATP and 2 pyruvate molecules (blue). Lactate dehydrogenases catalyze the interconversion of lactate and pyruvate (purple). Pyruvate is transported into mitochondria, where it enters the TCA cycle to generate high-energy electron carriers NADH and FADH2 (green), driving the complete oxidation of glucose through the mitochondrial electron transport chain (red). Glucose entering the brain can also enter the PPP. PPP is an anabolic pathway that uses glucose to produce 5-carbon sugars and NADPH, an essential co-factor used in nucleotide and lipid biosynthesis (yellow). Glucose can also be stored in the form of glycogen via glycogen synthase, a process mainly active in astrocytes. Right: Energy pathway maps. Colors show z-scored mean expression values across all genes in each pathway. ppp, pentose phosphate pathway; tca, tricarboxylic acid cycle; oxphos, oxidative phosphorylation; lactate, lactate metabolism and transport.

Left: Pathways involved in brain energy metabolism. Energy metabolism refers to processes involved in energy production from nutrient molecules. Glucose is the main energy source in the brain under normal physiological conditions. Glucose entering brain cells can be utilized in three parallel pathways. It can be processed through glycolysis to produce 2 ATP and 2 pyruvate molecules (blue). Lactate dehydrogenases catalyze the interconversion of lactate and pyruvate (purple). Pyruvate is transported into mitochondria, where it enters the TCA cycle to generate high-energy electron carriers NADH and FADH2 (green), driving the complete oxidation of glucose through the mitochondrial electron transport chain (red). Glucose entering the brain can also enter the PPP. PPP is an anabolic pathway that uses glucose to produce 5-carbon sugars and NADPH, an essential co-factor used in nucleotide and lipid biosynthesis (yellow). Glucose can also be stored in the form of glycogen via glycogen synthase, a process mainly active in astrocytes. Right: Energy pathway maps. Colors show z-scored mean expression values across all genes in each pathway. ppp, pentose phosphate pathway; tca, tricarboxylic acid cycle; oxphos, oxidative phosphorylation; lactate, lactate metabolism and transport.

How are energy #metabolism pathways distributed across the #cortex? @alaindagher.bsky.social &co map five pathways in the human #brain, linking metabolic organization with brain structural & functional properties, as well as developmental dynamics @plosbiology.org πŸ§ͺ plos.io/4c1JVp8

02.02.2026 17:25 πŸ‘ 12 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
Le gras est-il vraiment mauvais pour la santΓ© ?
Le gras est-il vraiment mauvais pour la santΓ© ? YouTube video by La Vie En 2.0

youtu.be/VTten2dzOjo -- J'explore le rΓ΄le des graisses sur le poids, la santΓ© cardiovasculaire et le cerveau, en distinguant clairement les graisses saturΓ©es et insaturΓ©es, le cholestΓ©rol et les lipoprotΓ©ines, le sucre et l'inflammation.

01.02.2026 14:19 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Everything that RFK Jr, Jay Bhattacharya and fellow anti-vaccine zealots have said about COVID vaccines is garbage, as proven by world class, international scientific studies.

30.01.2026 02:39 πŸ‘ 14 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0
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Genetic Data From Over 20,000 U.S. Children Misused for β€˜Race Science’

www.nytimes.com/2026/01/24/u...

25.01.2026 09:32 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Vous en avez marre des GAFAM et de l’ultra dΓ©pendance aux services US ? Voici des solutions, toutes prΓ©sentes dans notre fiction en accΓ¨s libre « GAFAM : 24h dans la peau d’un repentiΒ Β».

Si vous avez des suggestions, n’hΓ©sitez pas Γ  en donner en commentaires πŸ™πŸΌ

24.01.2026 08:52 πŸ‘ 1105 πŸ” 550 πŸ’¬ 153 πŸ“Œ 38
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a man in a suit and tie is sitting on a couch and saying `` somebody get me a drink please '' . ALT: a man in a suit and tie is sitting on a couch and saying `` somebody get me a drink please '' .

all day updating websites, reports, grant summaries, etc ..

23.01.2026 16:04 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

glass half full pov "technical fixes [..] may offer reassurance, but they can’t solve the deeper cultural pressures in science that reward speed and novelty over care and verification" deep fake in science may push toward getting back to slow science (hopefully - hcommons.org?get_group_do...)

22.01.2026 07:36 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Part 1: How do LLMs work?
Part 1: How do LLMs work? YouTube video by Andrew Perfors

I just created a series of seven deep-dive videos about AI, which I've posted to youtube and now here. 😊

Targeted to laypeople, they explore how LLMs work, what they can do, and what impacts they have on learning, well-being, disinformation, the workplace, the economy, and the environment.

22.01.2026 00:45 πŸ‘ 492 πŸ” 192 πŸ’¬ 19 πŸ“Œ 18

WTF

20.01.2026 15:55 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0