Nicolas Chiaruttini

👏 and so happy to see the task progress bar being used!

Appose processing hackathon with @jytinevez.bsky.social, @ctrue.bsky.social, @gaellel.bsky.social, @strigaud.bsky.social, Carlos and Thomas . Simple POC with Java calling python through Appose to flip blocks. Promising!

I need this.

YouTube's real genius: get companies to pay for ads so annoying that users end up paying Google directly to remove them. Brands fund their own irrelevance.

Very informative:

ome.github.io/ome-ngff-too...

Nice! But why the black edges ?

Nice! Sorry no time to look in detail, but how does mcp work with images ? Is there an included vision model that takes rgb screenshots, or is it just text based ?

😂

Unexpected artistic image.

Smashing console logs (which are not errors) -> very dumb bottleneck 😅.

And... Claude did it 😱

10 hours -> 10 seconds for initialisation. Looks promising.

Claude code flexing:
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For your case with uniform TIFFs on network storage, lazy validation would transform a multi-hour init into seconds. The validation cost is amortized across actual reads.
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Let's see if that's true!

Is there a way to sync claude code with git: if I switch branch or checkout an older commit then the discussions revert to their states at these previous points / branch ?

a woman says " would you like to join us " with her eyes closed ALT: a woman says " would you like to join us " with her eyes closed

📢 Open faculty position – Origins of Life
We have an opening in our section at the University of Geneva! 🧬🚀

SPREAD THE WORD

Apply here: jobs.unige.ch/www/wd_porta...

"Resist the empire building" Too late! Here's the dependency graph of packages developed at the BIOP for ABBA (go.epfl.ch/abba) (except clij and labkit)

A bit late to the party but 🤯 by Claude code.

Are there any rankings of LLM capabilities by language? My intuition is: more verbose and grammatically strict languages would perform better.

Cadeau :

BigVolumeBrowser: a new 3D multi volume/mesh/point clould (SMLM) data viewer Hello everyone, I’d like to share with you another 3D viewer for FIJI, BigVolumeBrowser (full documentation link). It‘s a first initial public release, so there is still space for improvements. Le...

Finally, the first public release of #BigVolumeBrowser, so after teasers, you can try it yourself. For details, please check the announcement post (1/2)
forum.image.sc/t/bigvolumeb...

4Pi-SIMFLUX: 4Pi single-molecule localization microscopy with structured illumination - Nature Methods 4Pi-SIMFLUX is a single-molecule localization microscopy approach that achieves a near-isotropic resolution below 10 nm in whole mammalian cells.

We are happy to share our latest work, 4Pi-SIMFLUX, which combines structured illumination with interferometric detection to achieve near-isotropic 3D localization precision of 2–3 nm and resolve sub-10 nm structural features across whole mammalian cells.
www.nature.com/articles/s41...
rdcu.be/eQVxt

Diving into video editing to update ABBA's tutorial. CapCut's free version is pretty great! (Now I will need to make peace with the sound of my own voice). Here's a preview:

Very cool! We tried this, and it worked beautifully! (We did not require the second film; maybe we were lucky! )

There's just one thing we did not achieve yet: the gel was moving quite a lot. How do you prevent that ? Does PLL treatment work with the FEP film ?

StayRose: A photostable StayGold derivative redshifted by genetic code expansion Photobleaching of fluorescent proteins often limits the acquisition of high-quality images in microscopy. StayGold, a novel dimeric GFP recently monomerized through sequence engineering, addresses thi...

Our new paper is published in the Journal of Chemical Biology! 🏮 We share StayRose, a red version of StayGold 🏮 StayRose has an unnatural amino acid-based chromophore, and has the same immense photobleach-resistance as StayGold 💡

I really want to get some time to play with it!

Droplet outbursts from onion cutting | PNAS Cutting onions often leads to tear-inducing aerosol release, yet the underlying mechanics remain poorly understood. In this work, via high-speed ch...

For those who like cooking and microscopy,

www.pnas.org/doi/10.1073/...

Thanks for the link @anjaliesch.bsky.social

My favorite thingy: Direct data streaming and stage control from Java!

Had an amazing time at the ZEISS Smart Microscopy Workshop! Huge thanks to @romainguiet.bsky.social and the entire @zeiss-microscopy.bsky.social team for their dedication and fantastic organization. #Microscopy #ZEISS

LUT color mapping for spots/particles rendering in #bigvolumeviewer is almost finished. The speed is mapped by color (middle) and color + spot size (right).

#QuPath + Imglib2 and #BDV ❤️

Promising start!

(Mainly Léo and Pete's work github.com/qupath/qupat... + a small addition)