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Maddie Ceminsky

@mceminsky

PhD candidate in the Gunn lab at Cornell. Engineering carbon fixation. Biochemistry, structural biology. Rock climbing, music, and hiking! she/her

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15.12.2024
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Latest posts by Maddie Ceminsky @mceminsky

Super excited to finally see this out! Also, hornwort emojis need to be publicly available

05.03.2026 21:11 πŸ‘ 6 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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I aspire to exude as much confidence as this little Kinesin protein strutting along a microtubule while hauling intracellular cargo.

Look at that little guy go! πŸ”¬πŸ§ͺ

03.03.2026 19:02 πŸ‘ 3360 πŸ” 658 πŸ’¬ 126 πŸ“Œ 54

Regret to announce that we’ve reached Wrong Coat season. Every coat you wear from now til mid April will be The Wrong Coat for the weather

27.02.2026 08:29 πŸ‘ 3338 πŸ” 1004 πŸ’¬ 41 πŸ“Œ 49
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The chloroplast ionome shines light on the dynamics of organellar iron homeostasis Loss of chloroplast iron (Fe) ferritin storage leads to Fe re-shuttling into the vacuole and reduced leaf tissue Fe content.

The chloroplast ionome shines light on the dynamics of organellar iron homeostasis academic.oup.com/plcell/artic... @theplantcell.bsky.social

30.01.2026 14:30 πŸ‘ 7 πŸ” 3 πŸ’¬ 0 πŸ“Œ 1
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A dynamic displacement mechanism drives protein import into mitochondria Most mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...

πŸ“’ New preprint alert!
How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gateβ€”using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code.
www.biorxiv.org/content/10.6...
#StructuralBiology #Mitochondria
🧡 1/8

14.01.2026 19:16 πŸ‘ 39 πŸ” 21 πŸ’¬ 2 πŸ“Œ 0

How does protein folding change inside biomolecular condensates?

Our new preprint put forwards a framework for predicting this!! πŸ₯³πŸ₯³πŸ₯³πŸ₯³ work by the talented @nathanieldhess.bsky.social

14.01.2026 21:22 πŸ‘ 35 πŸ” 13 πŸ’¬ 0 πŸ“Œ 0

Every time people focus on resolution as a competitive number rather than what biochemical detailed is revealed at that resolution is being sent this little guy

13.01.2026 19:39 πŸ‘ 6 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

"are you enjoying duo mobile" does a hamburger enjoy being made of quarks. does a fish enjoy linear time. does the mountain enjoy the first taste of a cup of hot chocolate when you get back to the ski lodge. your question means nothing to me. i couldn't enjoy duo mobile even if i tried

03.12.2025 19:36 πŸ‘ 1482 πŸ” 310 πŸ’¬ 20 πŸ“Œ 15
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Crystallographic Ensembles Reveal the Structural Basis of Binding Entropy in SARS-CoV2 Macrodomain Structure-based drug design has traditionally focused on optimizing static, enthalpic interactions between ligands and proteins or on displacing binding site solvent molecules to entropically favor bi...

New preprint! Entropy drives molecular recognition, yet most structure-based drug design ignores it because it is difficult to measure. X-ray crystallography captures ensembles, not single structures. Can we extract thermodynamically meaningful entropy from them?

www.biorxiv.org/content/10.1...

01.12.2025 14:27 πŸ‘ 31 πŸ” 10 πŸ’¬ 1 πŸ“Œ 0
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CRISPR-Cas–mediated heritable chromosome fusions in Arabidopsis The genome of Arabidopsis thaliana consists of 10 chromosomes. By inducing CRISPR-Cas–mediated breaks at subcentromeric and subtelomeric sequences, we fused entire chromosome arms, obtaining two eight...

And now we have Arabidopsis plants with 8 chromosomes instead of 10 and no obvious phenotypic differences, this week in @science.org
#PlantScience
Paper here: www.science.org/doi/10.1126/...

Perspective here:
www.science.org/doi/10.1126/...

21.11.2025 10:20 πŸ‘ 97 πŸ” 35 πŸ’¬ 0 πŸ“Œ 3
PNAS Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

Rubisco is slow across the tree of life

@omc111.bsky.social

www.pnas.org/doi/10.1073/...

20.11.2025 20:15 πŸ‘ 4 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
An illustration of a carbonic anhydrase complex in a synthetic mini-carboxysome

An illustration of a carbonic anhydrase complex in a synthetic mini-carboxysome

Pleased to see this collaboration with a great PhD student Pei Cing Ng, from Prof. Luning Liu's lab at Liverpool University published. Structure of the H. neapolitanus carbonic anhydrase and localisation in a mini-carboxysome: www.pnas.org/doi/epdf/10....

13.11.2025 09:57 πŸ‘ 22 πŸ” 11 πŸ’¬ 1 πŸ“Œ 2

Every day I understand the Butlerian Jihad more and more

10.11.2025 16:26 πŸ‘ 84 πŸ” 11 πŸ’¬ 4 πŸ“Œ 0
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Global profiling of protein complex dynamics with an experimental library of protein interaction markers - Nature Biotechnology FLiP–MS uses a library of protein–protein interaction markers to understand protein complex dynamics.

FLiP–MS uses a library of protein–protein interaction markers to understand protein complex dynamics go.nature.com/4dQabQw
rdcu.be/eJI3A

09.10.2025 01:02 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Enzyme specificity prediction using cross attention graph neural networks - Nature Nature - Enzyme specificity prediction using cross attention graph neural networks

www.nature.com/articles/s41...

08.10.2025 17:09 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

How does catalysis emerge from non-catalytic domains?

In our new paper, we show that catalytic activity can arise without conserved active-site residues β€” through multimerization and electrostatic features instead.

A striking case of catalysis evolving from binding.

08.10.2025 14:32 πŸ‘ 15 πŸ” 10 πŸ’¬ 2 πŸ“Œ 0

This is super cool! I love the combination of computation and wet lab. The preference for slow codons in mitochondrial targeted proteins is thought provoking - presumably this could also be true of chloroplast targeted proteins

08.08.2025 00:08 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Awesome to see this epic piece of work, led by @cecclementi.bsky.social, finally appear in @natchem.nature.com.

The development of a general coarse-grained protein forcefield to describe folding, binding and conformation changes without solvent and all-atom, has been long anticipated!

18.07.2025 11:25 πŸ‘ 31 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
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Mapping allosteric rewiring in related protein structures from collections of crystallographic multiconformer models How do related proteins with a common fold perform diverse biological functions? Although the average structure may be similar, structural excursions from this average may differ, giving rise to allos...

New @biorxiv-biophys.bsky.social preprint from the #keedylab! πŸ‘€

www.biorxiv.org/content/10.1...

How do related proteins perform distinct functions despite sharing a similar structure?...

27.05.2025 19:23 πŸ‘ 9 πŸ” 8 πŸ’¬ 1 πŸ“Œ 0

Working on modeling waters for the first time right now, currently leaning towards no, water is not real

30.06.2025 00:19 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

I can’t wait for a coot-free future

30.06.2025 00:09 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Do structure, they said. It’ll be fun, they said. *quadsulfide bond appears*

30.04.2025 14:27 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Tennis Balls xkcd.com/3080

25.04.2025 13:18 πŸ‘ 11079 πŸ” 956 πŸ’¬ 78 πŸ“Œ 34
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Advances in uncovering the mechanisms of macromolecular conformational entropy - Nature Chemical Biology Protein conformational entropy plays a vital role in functions like binding and catalysis. This Perspective discusses three ways macromolecules use conformational entropy: prepaying entropic costs, re...

A Perspective by @stephanieaw.bsky.social and @fraserlab.com discusses ways macromolecules use conformational entropy to control binding, catalysis, and allostery

www.nature.com/articles/s41...

25.04.2025 15:35 πŸ‘ 42 πŸ” 19 πŸ’¬ 0 πŸ“Œ 1
A diagrame of the molecular parts used to make a synthetic biomolecular condensate and confocal microscopy images of the condensates

A diagrame of the molecular parts used to make a synthetic biomolecular condensate and confocal microscopy images of the condensates

Outstanding work by @anyalb.bsky.social in my lab - she targeted enzymes to synthetic biomolecular condensates in plants and showed increases in metabolic pathway activity, likely due to protection of the introduced enzymes from proteolysis
#PlantScience
onlinelibrary.wiley.com/doi/10.1111/...

25.04.2025 09:20 πŸ‘ 18 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0
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Protein function often depends on protein dynamics. To design proteins that function like natural ones, how do we predict their dynamics?

@hkws.bsky.social and I are thrilled to share the first big, experimental datasets on protein dynamics and our new model: Dyna-1!

🧡

20.03.2025 15:02 πŸ‘ 104 πŸ” 38 πŸ’¬ 6 πŸ“Œ 5
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PDB101: Irina Bezsonova Gallery PDB-101: Training, Outreach, and Education portal of RCSB PDB

You can download my protein structure-inspired artwork from pdb webpage:

pdb101.rcsb.org/sci-art/bezs...

@rcsbpdb.bsky.social
@pdbeurope.bsky.social
#sciart

15.03.2025 11:41 πŸ‘ 107 πŸ” 28 πŸ’¬ 1 πŸ“Œ 5
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Been thinking about creating a collection of good protein structure figures, as inspiration for my own work.

#1 www.nature.com/articles/s41...

03.03.2024 08:37 πŸ‘ 173 πŸ” 54 πŸ’¬ 7 πŸ“Œ 10

How Ironic that on the International Day of Women and Girls in Science, Woman's portraits have been taken down at NIH and Women is a forbidden word that if found in your NSF grant could get it revoked. #womeninstem

11.02.2025 13:20 πŸ‘ 97 πŸ” 39 πŸ’¬ 0 πŸ“Œ 2
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CDC ordered to stop working with WHO immediately, upending expectations of an extended withdrawal U.S. public health officials have been told to stop working with the World Health Organization, effective immediately. The surprise decision is focused on the U.S.

Withdrawing US funding from the World Health Organization is a potential disaster for public health worldwide, due to the impact it will have on the important work the WHO does. Preventing the CDC from even *talking* with WHO personnel is a step much farther toward undermining global health & safety

27.01.2025 22:31 πŸ‘ 4690 πŸ” 1534 πŸ’¬ 324 πŸ“Œ 175