CompGenLabUB

The pipeline stands out as a reproducible, user-friendly and adjustable automated protocol that allows user-friendly TES oriented analyses for virome study. Visit our GitHub page for more details: https://t.co/4bTXIhknAT 🧵6/6

The targeted viral species and similar sequences were notably enriched when compared to non targeted viral species. 🧵5/6 https://t.co/1BLxCCHI4e

CAPTVRED got higher Precision, Recall & F-1 stats, compared to other automated pipelines, in synthetic datasets. It was used to assess performance of a capture panel too, resulting in an enrichment of the viral fraction & reduction of other fractions of non-interest.🧵4/6

This work presents a downstream bioinformatics analysis that complements and enhances the performance of this experimental approach. The pipeline includes a setup module that subsets and adapts the database together with the targeted viral species sequences. 🧵2/6

Happy to share our latest publication in viral metagenomics. https://t.co/vLcRYe9yeZ
CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 https://t.co/nAwDGrGX2X

#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B)
Poster B06
Leung, Casey
University of Toronto
"Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".

#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A)
Poster A04
Dreier, Fabienne
MPI-NAT
"In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".

#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Gaurav Vaidya
EMBL-Heidelberg
"Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".

#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Alberto Perez-Posada
University of Exeter
"The regulatory logic of Planarian stem cell differentiation".

Farewell to all #EMPB2024 participants, we are looking forward to meet you all on the next edition of the European Meeting on Planarian Biology!

Announcing the #EMPB2024 winners of the best junior scientist talks and best poster presentations. https://t.co/Gl8saxnzmX

Last #EMPB2024 session was a round table for an open discussion on new technologies that will be useful for the planarian community. https://t.co/QN4rhedGxL

Invited online talk via Zoom by Oded Rechavi (Tel-Aviv University) at #EMPB2024. https://t.co/iPV2l5pW7F

Another interesting #EMPB2024 talks session on "Planarian Cell Biology", chaired by Prasad Abnave (NCCS-Savitribai Phule Pune University). https://t.co/ChdDkXFwNB

Enjoying the afternoon #EMPB2024 posters session! https://t.co/02hMKCfwrC

Other flatworn species were welcome on the "Beyond Schmidtea mediterranea" #EMPB2024 talks session chaired by Claus Kuhn (University of Bayreuth). https://t.co/bDNtl08ZDX

Talks retaking "Regeneration & Stem Cells" tòpic on the third session of #EMPB2024 chaired by Hanh Vu (EMBL-Heidelberg). https://t.co/8U0y6YiJGX

People enjoying the morning #EMPB2024 posters session! https://t.co/gifHRBRT9D

Starting session II "Immune & Toxin Responses", chaired by Karen Smeets (Hasselt University), at #EMPB2024 https://t.co/CinmtZPRQ6

Omri Wurtzel (Tel-Aviv University) chairing #EMPB2024 first talks session on "Stem Cells & Regeneration" https://t.co/Vl26cPhyW7

Bo Wang (Stanford University) invited talk opening the #EMPB2024 meeting https://t.co/jPmAVntXrz

Jochen Rink (MPI-NAT) opening remarks at #EMPB2024 https://t.co/YwvCONliM7

6th European Meeting on Planarian Biology #EMPB2024 is about to start. Welcome all participants! https://t.co/Pc5yqT0ss0

#EMPB2024 Abstracts Book is already available from the meeting web page, here you can find a direct link to the PDF https://t.co/X4PKluoIzW https://t.co/W2pn1rtMJk

We are happy to announce that a preliminary program and venue information for #EMPB2024 is already available on the meeting website (https://t.co/FSbSzd8VF1) Further details about the talks coming soon!

We celebrate today Marcel Nos' great defense for his BSc in Biology thesis (#TFG2024) @BiologiaUB @GeneticsUB @CompGenLabUB https://t.co/ZuOZ71Reyk

We are happy to announce that registration is already open for this year European Meeting on Planarian Biology (#EMPB2024), taking place in Platja d'Aro, Oct 13-15th. Further info at https://t.co/FSbSzd8VF1 https://t.co/ifZ6yCns66

We were pleased to introduce @CompGenLabUB main research lines on the elevator pitch talks session for @IBUB_UB Research Day 2023. #IBUB_ResearchDay2023 https://t.co/Pj4Y82jzSs

We celebrate today the great defense of Marta García Nieto (@torisbajo) for her BSc in Biomedical Sciences thesis (#TFG2023) @BiologiaUB @GeneticsUB @LabViruses @CompGenLabUB https://t.co/L7LlKPvNqp

We are proud of @TaalMaria97, defending her Master Project about Captvred pipeline for the @UPFBarcelona MSc of Bioinformatics for Health Sciences. #captvred @LabViruses @CompGenLabUB https://t.co/5h9zEIY1FD