Nipah virus G protein with 16813 ligands (mostly waters) mapped from similar structures.
ChimeraX can run Foldseek to find similar structures, such as distantly related homologs, and analyze the results, for example, mapping all ligands onto your query structure. Here are ligands mapped onto Nipah virus G protein. www.rbvi.ucsf.edu/chimerax/dat...
06.03.2025 23:06
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Centromere evolution isn't a sudden switch!
Our study shows centromere transitions are a step-by-step process driven by a combination of drift and selection. Discover how the kinetochore interface shapes this gradual change in our new preprint π₯³ doi.org/10.1101/2025.01.16.633479 π§΅(1/8)
17.01.2025 11:17
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π₯π₯π₯π₯π₯π₯
18.01.2025 02:27
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The more I think about it, the more convinced I am that the holy grail here is if this can go beyond predicting ratio of folded to unfolded, to also predicting ratio of folded state A to folded states B, C, D, etc. Example from doi.org/10.1016/j.molcel.2024.04.008 w/ changes in the transporter OCT1
11.12.2024 07:52
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It was fantastic and humbling to receive a personal email from @J_A_C_S, the editor-in-chief, congratulating us on this work. Malay_Moldal and others deserve all the credit.π
10.12.2024 17:14
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Meet the CALVADOS RNA model
Ikki Yasuda, SΓΆren von BΓΌlow & Giulio Tesei have parameterized a simple model for disordered RNA. Despite it's simplicity (no sequence, no base pairing) we find that it captures several phenomena that depend on the charge, stickiness and polymer properties of RNA π§¬π§Άπ§ͺ
29.11.2024 08:25
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This is pretty impressive--closing the gap between superresolution microscopy and structural biology is one of the Holy Grails and this is a big step in that direction--check out the nuclear pore imaging
29.11.2024 00:27
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The Dynamic Lives of Intrinsically Disordered Proteins
Shapeshifting proteins challenge a long-standing maxim in biology.
Very nice article by Danielle Gerhard in The Scientist on
βThe Dynamic Lives of Intrinsically Disordered Proteinsβ
with quotes from Gabi Heller, @alexholehouse.bsky.social and myself about our shared love of and fascination with these proteins
www.the-scientist.com/the-dynamic-...
16.09.2024 17:02
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Experimental results showing DNA break formation by purified SPO11 protein. Above is an image of an electrophoresis gel, below is a graph showing quantification of the DNA cleaving activity
Hi Bluesky. For my first post, I'd like to advertise the latest preprint from my lab, describing at long last our reconstitution of SPO11-dependent double-strand break formation from purified recombinant proteins. Outstanding work from PhD student Zhi (Zack) Zheng.
23.11.2024 16:00
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Excited to share our new study with the MΓΌller and @SchullerJm labs, online @nature: https://www.nature.com/articles/s41586-022-04971-z
This is T. kivui, an anaerobic bacterium. It uses hydrogen energy to store #CO2. How does it do it? #CryoET revealed membrane-anchored bundles of...
21.07.2022 04:51
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