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Brannigan Lab

@branniganlab

Molecular simulation of proteins, membranes, and small molecules, in the Center for Computational and Integrative Biology at Rutgers-Camden. PI: Grace Brannigan http://branniganlab.org

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13.01.2025
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Latest posts by Brannigan Lab @branniganlab

Great job, everyone! Until next time 😁πŸ₯³

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Regina presented on using DNA to attach gold nanoparticles to produce light-sensitive nanotechnology!

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Jahmal presented on his latest developments for a Martini gold model!

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Jesse presented on how the Density-Threshold Affinity (DTA) method measures the binding affinity of lipids to membrane proteins!

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Ezry presented on how SAFEP can be used to calculate the absolute binding affinity of a lipid to a membrane protein!

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Connor presented a poster that discussed our blobulation algorithm! Feel free to check it out πŸ˜„ www.blobulator.branniganlab.org

04.03.2026 19:27 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

In addition to two great talks by our lab at the BPS conference, our PhD students showed off their wonderful posters! Thank you, @ccib-rutgers.bsky.social, for giving us the opportunity to present our research!🧡

04.03.2026 19:27 πŸ‘ 1 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Great job, everyone! Until next time 😁πŸ₯³

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Regina presented on using DNA to attach gold nanoparticles to produce light-sensitive nanotechnology!

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Jahmal presented on his latest developments for a Martini gold model πŸ˜„!

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Jesse presented on how the Density-Threshold Affinity (DTA) method measures the binding affinity of lipids to membrane proteins!

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Post image

Ezry presented on how SAFEP can be used to calculate the absolute binding affinity of a lipid to a membrane protein!

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Connor presented a poster that discussed our blobulation algorithm! Feel free to check it out 😁: www.blobulator.branniganlab.org

04.03.2026 19:23 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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At the BPS conference, @gracebrannigan.bsky.social also gave an amazing talk at the Membrane Structure and Function Symposium! πŸ‘πŸ˜„ Well done!

03.03.2026 17:05 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Our PhD student, Lindsey Riggs, gave her first talk at BPS on "Clustering the ensemble of an IDP by contiguous regions of hydrophobicity reveals distinguishable conformational states" Great job, Lindsey! πŸŽ‰πŸ˜

03.03.2026 16:45 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

β€’ Interactive web interface links known mutations with biophysical context: www.blobulator.branniganlab.org
β€’ CLI for batch analysis
β€’ VMD plugin for structure overlay
For more information, read the paper here:
doi.org/10.1021/acs....

16.01.2026 19:55 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Blobulator

Not all mutations change a protein’s predicted structure, but they can still reorganize its sequence! We introduce the blobulator toolkit for exploring hydrophobic organization 🧡:

16.01.2026 19:55 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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The 7D motion theater and human crane were definitely highlightsπŸ˜†we also found some unique puppets at a thrift store and ended the trip with a beautiful hike! Until next time, Poconos! ⛰️

15.12.2025 00:43 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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We had tons of fun playing Dutch Blitz and MysteriumπŸ‘»! We even got a few games of pool inπŸŽ±πŸ˜„

15.12.2025 00:43 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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We recently took a trip to the Poconos to celebrate our lab’s many recent accomplishments, including Regina and Lindsey passing their qualifying exams! Congratulations to you both πŸŽ‰

15.12.2025 00:43 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Our PhD student Lindsey Riggs presented a poster about the Blobulator toolkit at the MidAtlantic Bioinformatics Conference last week! Well doneπŸ‘πŸ»! Check out the Blobulator web tool here 😁: blobulator.branniganlab.org

10.11.2025 03:07 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
SARS-CoV E protein couples asymmetric leaflet thickness and curvature deformations The Envelope protein (E protein) of SARS-CoVs 1 and 2 has been implicated in the viral budding process and maintaining the spherical shape of the viru…

⚠️Do you run coarse-grained membrane simulations with restraints on the absolute positions of any molecules? We found a common setting combination that causes metastable membrane distortions! Read our paper here: www.sciencedirect.com/science/arti...

31.10.2025 16:32 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Thank you to everyone who participated, and congratulations again to our winnersπŸŽ‰ !! Let us know your favorite image/movie 😁 Until next time!

31.10.2025 16:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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We also had some really unique media from Regina Salzer, Ezry Santiago-McRae, and another image from Jesse Sandberg!

31.10.2025 16:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Best General Scientific Media  - 2nd place - Brannigan Lab VMD Contest 2025
Best General Scientific Media - 2nd place - Brannigan Lab VMD Contest 2025 YouTube video by Brannigan Lab

2nd place πŸ₯ˆ: Ryan Lamb for "Under the Surface" youtu.be/4AAqFJvUxbU?...

31.10.2025 16:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Last but not least, this year we decided to introduce a "Scientific media category" which allows participants to explore various editing/rendering tools. Please congratulate our winners:

1st place πŸ₯‡: Jesse Sandberg for "A postcard from Wyoming"

31.10.2025 16:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Best Movie - 3rd place - Brannigan Lab VMD Contest 2025
Best Movie - 3rd place - Brannigan Lab VMD Contest 2025 YouTube video by Brannigan Lab

3rd place πŸ₯‰: Jesse Sandberg for "Sugar and Fat for the brain" youtu.be/dr8YujmwWcI?...

31.10.2025 16:30 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Best Movie - 2nd place - Brannigan Lab VMD Contest 2025
Best Movie - 2nd place - Brannigan Lab VMD Contest 2025 YouTube video by Brannigan Lab

2nd place πŸ₯ˆ: Connor Pitman for "Looking Glass" youtu.be/dT-x54ZXd-s?...

31.10.2025 16:30 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Best Movie  - 1st place - Brannigan Lab VMD Contest 2025
Best Movie - 1st place - Brannigan Lab VMD Contest 2025 YouTube video by Brannigan Lab

Moving on to the winners for Best #VMD Movie of 2025πŸŽ‰:
1st place πŸ₯‡: Jesse Sandberg for "Can you find the binding lipid?" youtu.be/9yo2ePhhUX8?...

31.10.2025 16:30 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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We also had fantastic image entries from Connor Pitman, Lindsey Riggs, Ryan Lamb, and a second image from Jesse Sandberg!

31.10.2025 16:30 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0