Anders K. Krabberød's Avatar

Anders K. Krabberød

@krabberod

Bioinformatician at the University of Oslo. Evolutionary biology, protists, progrock bassist.

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07.12.2023
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Latest posts by Anders K. Krabberød @krabberod

Perfect! Thank you!

27.12.2025 23:28 👍 0 🔁 0 💬 0 📌 0

#protistsonsky Can anybody help? I am looking for a pdf of "XXV. On the Mycetozoa" by de Bary, A. (1860). Annals and Magazine of Natural History, 5(28), 233–243.

27.12.2025 19:31 👍 1 🔁 0 💬 1 📌 0
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Key scientific events this week for the Oslo Mycology Group #OMG.
1- Maria Feiring brilliantly defended her Master thesis on the ecology and diversity of Myxomycete on boreal Forest soil and dead Wood.
@krabberod.bsky.social @ellathoen.bsky.social @drhyfe.bsky.social & Inger Skrede

17.12.2025 08:22 👍 3 🔁 1 💬 0 📌 0
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05.12.2025 18:11 👍 1 🔁 1 💬 0 📌 0
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Det er valg! Lurer du på hvordan partiene står i forhold til hverandre? 📊 Her er en hovedkomponentanalyse (PCA) basert på NRKs valgomat.
Fargene viser ideologisk blokktilhørighet, og linjene kobler partiene i et minimum spenntre – korteste vei som forbinder alle uten å lage løkker. #valg2025 #nrk

18.08.2025 19:58 👍 4 🔁 2 💬 1 📌 0
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Another version of our DNA metabarcoding course coming to an end. Thanks to the students and teachers @krabberod.bsky.social @ramalok.bsky.social @kbohmann.bsky.social @daniel-vaulot.bsky.social @micahdunthorn.bsky.social

11.04.2025 11:29 👍 14 🔁 2 💬 0 📌 2
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@krabberod.bsky.social presenting the Ribosomal Operon Database (ROD) at our ongoing DNA metabarcoding course
onlinelibrary.wiley.com/doi/10.1111/...

10.04.2025 09:29 👍 5 🔁 2 💬 0 📌 0

- The web interface now provides access to the ROD database that contains full-length eukaryotic ribosomal operons developed by @krabberod.bsky.social

03.04.2025 10:53 👍 1 🔁 1 💬 1 📌 1
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GitHub - krabberod/ROD: The Ribosomal Operon Database (ROD) The Ribosomal Operon Database (ROD) . Contribute to krabberod/ROD development by creating an account on GitHub.

github.com/krabberod/ROD

03.04.2025 21:33 👍 0 🔁 0 💬 0 📌 0

I am very happy that ROD (The Ribosomal Operon Database) is now included in the outstanding PR2 web interface, enhancing its accessibility and utility. I hope to make some updates to ROD in the near future. with @drhyfe.bsky.social

03.04.2025 21:33 👍 12 🔁 3 💬 1 📌 1
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Announcing the new release of the PR2 database, version 5.1.
pr2-database.org/post/news/20...

Very big thanks to all the contributors: @fonamental.bsky.social @ambonacolta.bsky.social @krabberod.bsky.social and more...

A few highlights:

03.04.2025 10:53 👍 25 🔁 19 💬 1 📌 2
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High short tandem repeat mutation recurrence in heat-stressed Arabidopsis thaliana lines The rise of the annual average temperature presents a strong selection pressure for many species. Sessile organisms, such as the plant Arabidopsis thaliana (A. thaliana), need to adapt to elevated tem...

New paper by our group, mutation accumulation experiment in heat-stressed Arabidopsis!
www.biorxiv.org/content/10.1...

27.01.2025 09:12 👍 6 🔁 2 💬 0 📌 0
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High short tandem repeat mutation recurrence in heat-stressed Arabidopsis thaliana lines The rise of the annual average temperature presents a strong selection pressure for many species. Sessile organisms, such as the plant Arabidopsis thaliana ( A. thaliana ), need to adapt to elevated t...

Check out our latest preprint. Recurrence of STR length mutations in heat stressed Arabidopsis lines (over many generations) www.biorxiv.org/content/10.1...

28.01.2025 09:57 👍 7 🔁 3 💬 0 📌 0
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ForBio and UiO/IBV course: Bioinformatics for environmental DNA sequencing - ForBio Read this story on the University of Oslo's website.

Registration is now open for the ForBio/UiO course “Bioinformatics for environmental DNA sequencing”
@biovitenskap.bsky.social @drhyfe.bsky.social @krabberod.bsky.social @ramalok.bsky.social

www.forbio.uio.no/events/cours...

23.01.2025 11:02 👍 16 🔁 15 💬 0 📌 0
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Let's kick of the New Year like an acantharian with a little #protistsonsky fireworks magic. Happy New Year 2025! 🦑

01.01.2025 16:18 👍 47 🔁 10 💬 2 📌 0
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Last Sunday of 2024 - Hoping for better year beginning this week!!!

29.12.2024 20:31 👍 6 🔁 1 💬 0 📌 0

"Ants solving a geometric problem and it's amazing."

This is a great example of 'emergent phenomenon':
- None of the ants understand the problem they're solving.
- None of them can see the whole shape.
- A series of small decisions or rules add up to something with a new layer of complexity.

25.12.2024 17:54 👍 1302 🔁 436 💬 33 📌 25
An image of a radiolarian from the Carribean Sea off of Puerto Rico, likely from the genus Eucecryphalus. Looks like a little glass hat.

An image of a radiolarian from the Carribean Sea off of Puerto Rico, likely from the genus Eucecryphalus. Looks like a little glass hat.

An image of a radiolarian from the Atlantic Ocean off of Bermuda, likely from the genus Eucecryphalus. Looks like a little glass hat.

An image of a radiolarian from the Atlantic Ocean off of Bermuda, likely from the genus Eucecryphalus. Looks like a little glass hat.

One of my favorite radiolarians. I call it a "little hat", but I guess it is probably Eucecryphalus sp. Here are two examples from Bermuda (Atlantic) and Puerto Rico (Caribbean). Exquisite little #protistsonsky. I love seeing these forms in different regions of the Oceans. #protistaday #marinelife

22.12.2024 14:30 👍 62 🔁 7 💬 0 📌 0
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Funding - International Society of Protistologists Student support, seed money, and more. Got a tip for a program that funds protist research? Contact the Vice President. Society funding: The Holz-Conner Travel Fund provides funding for travel […]

International Society of Protistologists is funding two symposia at the 16th International Congress of Protistology in Seoul, South Korea. Proposals are due 30 January 2025
#protist #protistsonsky
protistologists.org/programs/fun...

20.12.2024 08:37 👍 20 🔁 11 💬 1 📌 1
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The rhizarian testate amoeba Euglypha rotunda eats its co-cultured bacteria, but it will also chow down on GFP E. coli. One day I'll use these vids to measure digestion rates. @thealgaeman.bsky.social another answer to what they eat! #protistaday #protistsonsky

20.12.2024 23:39 👍 24 🔁 5 💬 3 📌 1
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Sometimes you need to take your little shelled amoebas out for a walk. Rhizarian testate amoeba euglypha rotunda #protistsonsky #protistaday

19.12.2024 12:46 👍 26 🔁 6 💬 2 📌 0
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New preprint led by Ruben Gonzalez-Miguens for a new coi database that should be useful to annotate metabarcoding datasets with protists.

www.biorxiv.org/content/10.1...

10.12.2024 16:14 👍 14 🔁 9 💬 0 📌 0
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A Novel Taxonomic Database for eukaryotic Mitochondrial Cytochrome Oxidase subunit I Gene (eKOI): Enhancing taxonomic resolution at community-level in metabarcoding analyses Metabarcoding has emerged as a robust method for understanding biodiversity patterns by retrieving environmental DNA (eDNA) directly from ecosystems. Its low cost and accessibility have extended its…

Happy to be part of this effort led by Rubén González-Miguéns: A Novel Taxonomic Database for eukaryotic Mitochondrial Cytochrome Oxidase subunit I Gene (eKOI) https://www.biorxiv.org/content/10.1101/2024.12.05.626972v1 eKOI will be integrated into @pr2-database.bsky.social 🙌 #protistsonsky

12.12.2024 08:00 👍 15 🔁 9 💬 0 📌 0
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🧬🦠 Exciting new resource for #protists lovers! The eKOI database to expand the power of COI metabarcoding with a focus on #protistsonsky & integrated in @pr2-database.bsky.social Lead by Rubén with @beaplab.bsky.social @fonamental.bsky.social @daniel-vaulot.bsky.social
Link: t.co/3lqzRaFw9V

17.12.2024 17:40 👍 43 🔁 10 💬 0 📌 0
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Palpitomonas: the movie. I like this blurry little video because it shows the cryptistid Palpitomonas with its two absurdly long flagella beating with two different patterns. I imagine it as a pianist playing different parts with each hand. #protistaday #protistsonsky

18.12.2024 12:59 👍 9 🔁 1 💬 0 📌 0
An SEM image of a testate amoebozoan that makes its shell from debris in the environment.

An SEM image of a testate amoebozoan that makes its shell from debris in the environment.

An SEM image of a testate amoebozoan that makes its shell from food particles--mostly diatom tests in this case!

An SEM image of a testate amoebozoan that makes its shell from food particles--mostly diatom tests in this case!

The rhizarian testate amoeba that I shared yesterday makes its shell out of intricate, self-constructed glass scales. Other testate amoebozoans in the same environment make their shells out of debris (left) or food (right). These are interesting examples of convergence! #protistsonsky #protistaday

16.12.2024 14:42 👍 19 🔁 7 💬 2 📌 0
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Today's #protistaday is a scan through a multinucleated Acantharian cell from here in the Gulf of Maine. All of the larger Acantharians I've looked at have multiple nuclei like this... need to take a look at/stain the teeny "baby" ones to see how these structures develop! #marinelife #protistsonsky

17.12.2024 14:49 👍 21 🔁 3 💬 0 📌 0
SEM image of a rhizarian testate amoeba (euglyphid) showing its glass scales.

SEM image of a rhizarian testate amoeba (euglyphid) showing its glass scales.

Not a fish or a dragon scale, but a single cell of a #protistsonsky. This rhizarian testate amoeba creates perfect tiny glass scales to build it's shell. From a peat bog. #protistaday.

15.12.2024 13:55 👍 168 🔁 31 💬 4 📌 2
The amoeba Strigomyxa ruptor (large yellow-orange cell) engulfs its prey, a Closterium alga (elongated green cell)

The amoeba Strigomyxa ruptor (large yellow-orange cell) engulfs its prey, a Closterium alga (elongated green cell)

This #amoeba eats prey like #owls do www.sciencenews.org/article/amoe...

The vampyrellid amoeba #Strigomyxa ruptor gen. et sp. nov. and its remarkable strategy to acquire algal cell contents onlinelibrary.wiley.com/doi/10.1002/...

#Protists #Algae #Amoebae #ProtistsOnSky #Microbes

14.12.2024 10:33 👍 24 🔁 8 💬 0 📌 1
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Wild things out there! A likely ciliate cyst from the Arctic
#protistsonsky

13.12.2024 09:35 👍 28 🔁 3 💬 0 📌 0