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CroAGE Project

@croage

CroAGE: funded by #NextGenerationEU & led by @da-bar.bsky.social. We study gene promoters across vertebrates using CAGE, AI & genomics. From zebrafish to humansβ€”toward new diagnostics, antitumor targets & precision medicine. πŸ‡­πŸ‡·

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Posts 20.07.2025
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Latest posts by CroAGE Project @croage

Glad to have contributed to this work, and big thanks to @amathelier.bsky.social, @damlaob.bsky.social, and @ievarau.bsky.social (and the whole JASPAR crew) for this great effort.

#JASPAR #TFmotifs #DeepLearning #Genomics

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03.12.2025 14:43 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
JASPAR: An open-access database of transcription factor binding profiles JASPAR is the largest open-access database of curated and non-redundant transcription factor (TF) binding profiles from six different taxonomic groups.

JASPAR 2026 is out πŸŽ‰

The new release massively expands the TF motif collections and adds a dedicated DeepLearning collection of motifs learned from deep learning models.

Database: jaspar.elixir.no
Paper (NAR): doi.org/10.1093/nar/...

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03.12.2025 14:43 πŸ‘ 63 πŸ” 28 πŸ’¬ 1 πŸ“Œ 0
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πŸš€ Exciting update!

Proud to share that our team members @kkajan.bsky.social and Marta BoΕ‘njakoviΔ‡ presented their research at the Mechanisms of Eukaryotic Transcription at Cold Spring Harbor Laboratory, Aug 26–30! #cshlmoet 🎀🧬

Thank you #nextGenerationEU for the opportunity!

04.09.2025 15:29 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 1
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🐦 @kkajan.bsky.social is exploring promoter usage during early avian development in #EvolCompGen. #ISMBECCB2025

24.07.2025 08:06 πŸ‘ 5 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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πŸ“ˆ Scaling CAGE analysis across tens of #DANIO-CODE samples with the @nf-co.re inspired CAGEflow pipeline β€”big data meets promoters. Catch Ira's poster D-515! πŸ¦“πŸ 

24.07.2025 08:06 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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πŸ¦“πŸ  Building the first promoter atlas of adult zebrafish organsβ€”expanding #DANIO-CODE. Visit Marta at poster C-514. #zebrafish #CAGE

24.07.2025 08:06 πŸ‘ 4 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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πŸ€– @da-bar.bsky.social is exploring AI-driven promoter architecture characterisation from CAGE! Come chat at poster D-507 at #ISMBECCB2025 @iscb-regsys.bsky.social

24.07.2025 08:06 πŸ‘ 4 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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πŸš€ The CroAGE team is attending to Liverpool for #ISMBECCB2025! Catch our CAGE & promoter research posters all week at ACC Liverpool. Thank you #nextGenerationEU for the opportunity🧡

24.07.2025 08:06 πŸ‘ 3 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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Eagerly waiting for the start of #ISMBECCB2025 with @croage.bsky.social team, @kkajan.bsky.social, Marta and Ira, with the great company of @damlaob.bsky.social and @ferenckata.bsky.social for a keynote talk from John Jumper πŸ§¬πŸ”¬

20.07.2025 17:33 πŸ‘ 7 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Meet our team!
πŸ‘¨β€πŸ”¬ Dr. Damir BaranaΕ‘iΔ‡ – Project Leader @da-bar.bsky.social
πŸ”¬ Dr. Matija PiΕ‘korc – Research Associate
πŸ‘©β€πŸ”¬ Dr. Katarina Kajan – Postdoc @kkajan.bsky.social
🧬 Marta BoΕ‘njakoviΔ‡ & Ira Renko – PhD candidates

20.07.2025 10:06 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Using cutting-edge technologies like CAGE (Cap Analysis of Gene Expression) and AI-driven algorithms, we aim to develop tools to explore promoter architecture & identify novel antitumor targets.

20.07.2025 10:06 πŸ‘ 1 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
CroAGE CroAge Project, Founded by the Europe Union

πŸš€ Introducing CroAGE – a #NextGenerationEU project advancing regulatory & comparative genomics in πŸ‡­πŸ‡· Croatia! We study gene promoters to understand how they control development & how tumours disrupt transcription.
πŸ”— croage.eu/en

20.07.2025 10:06 πŸ‘ 3 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0