Wagner Fagundes

MycoMobilome: a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom Abstract. Transposable elements (TEs) are found in nearly all eukaryotic genomes. Despite significant advances in the sequencing of genomes, TE resources r

Need to annotate transposons in fungal genomes? 🧬
Good news #MycoMobilome is now live! Check it out here: doi.org/10.1093/narg...
Access the sequences through our Zenodo community (you can also contribute seqs with credit), and synchronisation with @dfam.bsky.social!

w/ @danielcroll.bsky.social

There is a week left to apply for two available positions in my lab @ipbhalle.bsky.social

- PhD: ipb-halle.mhm.jobs/12-phd-posit...

- Postdoc: ipb-halle.mhm.jobs/13-postdocto...
Earliest start date: 01/05/2026.

We are interested in plant immune receptor biochemistry and evolution. Please share!

@thaisdalsasso.bsky.social is applying new tools to address the evolution and functional diversification of secreted proteins of fungal plant pathogen. Preprint here: www.biorxiv.org/content/10.6...

Honored and over the moon to add another Chronobiology talk to the TEDx universe at Aberystwyth next week! 🌓🦟 There are still some tickets left!

tedxaberystwyth.com

@aberuni.bsky.social @mpi-evolbio.bsky.social @clocksevolution.bsky.social @bioclocksuk.bsky.social

📣 Our latest story just dropped on bioRxiv:: A structurally unique effector shared between Verticillium dahliae and Fusarium oxysporum is involved in cotton defoliation and virulence on other hosts www.biorxiv.org/content/10.6... 🧵

Today is the #InternationalDayofWomenandGirlsinScience ✨
To celebrate, we’re opening registration for our workshop "Women in Evolutionary Biology II" — keynotes, research, networking, and discussions on equality & inclusion in science.
📍 Plön (Germany) | 🔗 workshops.evolbio.mpg.de/event/144/ov...

PhD position in biology (m/f/d) (1/2026) Leibniz Institute of Plant Biochemistry (Halle) offers a PhD position in Biology

Please share! We are looking for a PhD student (4 years) starting from 01/05/2026 at @ipbhalle.bsky.social!
If you are interested in plant immunity, receptor biochemistry and evolution, consider applying! Deadline 09/03/2026.

Application portal: ipb-halle.mhm.jobs/10-phd-posit...

Postdoctoral position in biology (m/f/d) (2/2026) Leibniz Institute of Plant Biochemistry (Halle) offers a Postdoctoral position in Biology

Please share! We are looking for a postdoctoral scientist (2 years, extension possible) starting from 01/05/2026 at
@ipbhalle.bsky.social! The project focuses on plant immune receptor biochemistry and structural biology.
Deadline 09/03/2026.

Apply at: ipb-halle.mhm.jobs/11-postdocto...

Women in Evolutionary Biology II Women in Evolutionary Biology is an event to promote diversity and equality in the field. For this purpose, we invited 6 outstanding women as keynote speakers, offering a unique opportunity to learn from their experiences and celebrate their achievements. While all keynote speakers are women, scientists of all genders and backgrounds in evolutionary biology are welcome to participate in scientific presentations and discussion sessions on topics relevant for women in science. The workshop’s...

Join the Women in Evolutionary Biology II workshop from June 1-3, 2026, at the Max Planck Institute in Plön, Germany. Open to all genders. More info: https://workshops.evolbio.mpg.de/event/144/overview. Registration closes on Feb 20, 2026. #workshop

Please share!
My group at @zmbp-tuebingen.bsky.social is offering a post-doctoral position (4 years). We look for a structural biologist with experience in Cryo-EM/Cryo-ET to investigate the mechanisms of host invasion by pathogenic fungi. Deadline February 28th!
uni-tuebingen.de/universitaet...

Congratulations @marco-guerreiro.bsky.social, @estukenbrock.bsky.social and everyone involved! Great to see this study out! 🥳

Congrats @marco-guerreiro.bsky.social. @estukenbrock.bsky.social and colleagues on this exciting study linking codon optimization and adaptive translation to lifestyle transitions in a group of fungi.

Directors

Expressions of interest: Director at MPI EvolBio (f/m/d) — We invite expressions of interest from distinguished scientists in evolutionary biology with a bold, long-term research vision that complements our Institute. More information: www.evolbio.mpg.de/3856225/Dire...

Facultative heterochromatin mediated by core and accessory chromosome-encoded H3K27-specific methyltransferases controls virulence in a fungal phytopathogen Abstract. In many fungal phytopathogens, infection is regulated by accessory genomic regions enriched in facultative heterochromatin, but the precise role

Beyond excited to see this work finally out in @narjournal.bsky.social! We show that epigenetic modifiers on fungal accessory chromosomes can contribute to the overall epigenetic profile. Many thanks to @gomezlucia93.bsky.social and our other amazing collaborators 👏🏻

academic.oup.com/nar/article/...

#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics

Just a few days left to apply to the PhD position in our group. It focuses on selfish genes in #fungi and how they might affect the spread of giant #TEs called Starships.

New genomic techniques for plant breeding New genomic techniques can increase food security and mitigate climate change effects. EU rules aim to regulate these plant breeding methods.

Great news for new plant breeding technologies in Europe! 🥳 EU reaches preliminary deal on gene editing!
www.consilium.europa.eu/en/policies/...

This week we had a blast during our very first postdoc retreat of the MPI for Biology Tübingen and the Friedrich Miescher Laboratory! 🎊 We were honored to host Prof. Dr. Nadine Ziemert as our… | Had... This week we had a blast during our very first postdoc retreat of the MPI for Biology Tübingen and the Friedrich Miescher Laboratory! 🎊 We were honored to host Prof. Dr. Nadine Ziemert as our guest ...

Congratulations to the organizing committee for putting together an excellent first postdoc retreat for MPI-Bio and FML postdocs! Great to see such inspiring talks, strong community building, and clear dedication behind the scenes. Well done to everyone involved🎊
www.linkedin.com/feed/update/...

A large European diversity panel reveals complex azole fungicide resistance gains of a major wheat pathogen | mBio Sustainable food production requires the management of disease agents attacking crops. Application of antifungal compounds is among the key elements of pathogen containment; however, resistance can ri...

Finally out!
A large European diversity panel reveals complex azole fungicide resistance gains of a major wheat pathogen
journals.asm.org/doi/10.1128/...

A big thanks to @danielcroll.bsky.social & @GabrielScalliet

#azole #DMI #GWAS #fungicide #resistance #zymoseptoria #Europe

Responses to Temperature Shocks in Zymoseptoria tritici Reveal Specific Transcriptional Reprogramming and Novel Candidate Genes for Thermal Adaptation | Phytopathology® Pathogens’ responses to sudden temperature fluctuations, spanning various temporal scales, are critical determinants of their survival, growth, reproduction, and homeostasis. Here, we combined phenoty...

Responses to Temperature Shocks in Zymoseptoria tritici Reveal Specific Transcriptional Reprogramming and Novel Candidate Genes for Thermal Adaptation | Phytopathology® apsjournals.apsnet.org/doi/full/10....

Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen - Nature Communications In this study, the authors analysed a large genomic dataset to trace how jumping genes shaped the global spread of a major wheat pathogen and reveal bursts of activity over decades that drove adaptati...

TEs aren’t just genomic parasites, they’re also engines of genomic novelty.

Our new study with ~2,000 Z. tritici genomes shows repeated TE mobilization waves during global expansion.

With @danielcroll.bsky.social & @guidopuccetti.bsky.social

🧬 www.nature.com/articles/s41...

#TEworldwide

Postdoc position available at Max Planck Institute, Germany, focusing on the genetic basis of polygenic traits in Drosophila. Applications due by Dec 22, 2025. More info: barghi@evolbio.mpg.de. #postdoc

GitHub - hadley/genzplyr: dplyr but make it bussin fr fr no cap dplyr but make it bussin fr fr no cap. Contribute to hadley/genzplyr development by creating an account on GitHub.

Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....

genzplyr is dplyr, but bussin fr fr no cap.

1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?

We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!

www.biorxiv.org/content/10.1...

📣 I’m excited to share two open positions in my lab @leibniz-hki.de. For this interdisciplinary project with @luziagyr.bsky.social, I’m seeking (1) an enthusiastic PhD student interested in fungal natural product research and genetic engineering, as well as (2) a technical assistant 👇🏻

Widespread shifts in genome architecture and trophism across fungi. Phylogenetic positions of the shifts identified for genome size. Negative values denote an identified decrease in the genomic trait value while positive values denote an increase in the genomic trait value.

Fungal #GenomeSize variation is largely driven by TEs & lineage-specific genome defenses. @tbadet.bsky.social & @danielcroll.bsky.social show that presence/absence of RIP mutation systems influences #genome architecture, identifying a likely novel defense mechanism @plosbiology.org 🧪 plos.io/4hcC5tx

Tracking the evolutionary trajectory of a young hybrid plant pathogen A common mechanism by which emerging plant pathogens gain the ability to infect new hosts is hybridization. Despite its widespread occurrence, the outcomes of hybridization remain largely unpredictabl...

Tracking the evolutionary trajectory of a young hybrid plant pathogen. New preprint on how triticale powdery mildew evolved in the ~25 years since its emergence. Congrats to @jigisha1.bsky.social and all coauthors! doi.org/10.1101/2025...

Professorship in plant genetics.
The Botanical Institute at Kiel University is advertising a W2 professorship. Great opportunity to do plant research in the north of Germany. See:
www.berufungen.uni-kiel.de/de/dateien/o...

So happy to see my first first-author paper published! 🎈
A short thread on how Ectocarpus and its TE secrets have kept me busy lately:

rdcu.be/eITQH

This is really cool! 🤩