Un nouvel outil disponible à l'URGI qui vient compléter la suite logicielle #REPET pour les analyses de la dynamique des éléments transposables dans les génomes.
21.02.2026 10:47
👍 3
🔁 2
💬 0
📌 0
Un nouvel outil disponible à l'URGI qui vient compléter la suite logicielle #REPET pour les analyses de la dynamique des éléments transposables dans les génomes.
Le fruit d'une belle collaboration entre équipes d' @univparissaclay.bsky.social et au delà (@inrae-cnrgv.bsky.social, @ieesparis.bsky.social, @ugent-botany.bsky.social, @genscaleteam.bsky.social, @anses-fr.bsky.social, #DIADE #IGEPP) : sco.lt/9N25Ng via Scoopit/Life Sciences Université Paris-Saclay
Le pangénome de Brachypodium distachyon met en évidence la dynamique des éléments transposables dans l'espèce en lien avec des stress environnementaux sco.lt/6JjBei via Scoopit/Life Sciences Université Paris-Saclay @univparissaclay.bsky.social
🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130...
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
@johannconfais.bsky.social de @urgi-inrae.bsky.social et @hquesneville.bsky.social de @inrae-dipso.bsky.social ont représenté le stand @inrae-france.bsky.social lors de la nuit des chercheurs.euses @upecofficiel.bsky.social sciences-tech.u-pec.fr/la-faculte/a...
For those passionate about the aphid: Dysaphis plantagina, the #REPET track is now available on BIPAA JBrowse (bipaa.genouest.org/sp/dysaphis_...) with a direct link to #RepetDB for each #transposon copy! Enjoy! #TEsky
Such a collaborative adventure! Thanks a lot to all co-authors! @cnrsbiologie.bsky.social @urgi-inrae.bsky.social @inrae-toulouse.bsky.social @univparissaclay.bsky.social @nyuad-oaa.bsky.social 👏👏👏
Everything you always wanted to know about TE classification ! @nico971.bsky.social and @johannconfais.bsky.social present RepetDB a TE database to support your science at GDR #MobilET meeting.
Nous proposons un protocole de soumission de données aux archives EMBL-EBI. Vous pouvez visionner un webinaire à ce sujet ici www.youtube.com/watch?v=zezQ...
We have made two WheatIS videos available based on feedback from experiences with LLMs. You can access here www.youtube.com/watch?v=kEHc... and here www.youtube.com/watch?v=4imk...
Internship position open at INRAE-URGI for 2026, more details available here www.sfbi.fr/emplois/offr...
We have made public the data from WP2 of the BreedWheat project. You can find this resources here wheat-urgi.versailles.inrae.fr/Projects/Bre... with the label WP2. You can find phenotyping data, genotyping data and association data.
Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons
ELIXIR has released a position paper on open biodata, more information here elixir-europe.org/news/positio... or here www.linkedin.com/posts/elixir...
Check this interview wheatgenome.org/people/leade... on IWGSC website from our Deputy Director at URGI @michaelalaux.bsky.social. His thoughts on Wheat Genomics and bioinformatics on the last few years and for the future.
🚨📢 We are hiring a postdoc position at URGI in bioinformatics genomics. All details are available here urgi.versailles.inrae.fr/About-us/New...
The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬
Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...
Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes
#PAG32
github.com/cgroza/Graff...
Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem
Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at
POSTER80
After @tehub.bsky.social satellite workshop at #ICTE2024 and the creation of a working group on benchmark, what about the next step ? A manual curation workshop ? Share your thougth with the TEhub
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!
Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools
Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32
urgi.versailles.inra.fr/repetdb/begi...
URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...