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Alexander Harms

@aharms485

Bacteriophages, dormant bacteria, and bacterial immunity. Assistant Professor of Molecular Phage Biology at ETH Zürich.

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Latest posts by Alexander Harms @aharms485

Many thanks to you and @annechevallereau.bsky.social for hosting me in Lyon - great company, great discussions, and a great city! 🇫🇷🧬🚀

10.03.2026 10:44 👍 14 🔁 1 💬 0 📌 1
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Deltaviruses spread through a viral Trojan Horse Hepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr…

We found a viral Trojan Horse: a virus can hide inside another virus.This one surprised us: deltaviruses don’t just borrow a helper virus. They can travel inside it.
A literal Trojan Horse “virus-in-a-virus” route into cells. 🤯 Kudos to 1st author @viroscope.bsky.social and co-authors !

06.03.2026 18:29 👍 192 🔁 96 💬 8 📌 14

New preprint of our friend Aritz Roa @aritz-roa.bsky.social with Nicholas Taylor @nmitaylorlab.bsky.social - even if phage mechanics are not your thing, check out their MAGNIFICENT video of T4 host recognition + infection directly im the post! 🎬🧬🔥

07.03.2026 11:40 👍 17 🔁 3 💬 0 📌 0
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🚨Preprint! Happy to share the research from my PhD “Genome delivery of a contractile tailed phage and its superinfection exclusion mechanism”. We use cryoEM to study the genome ejection of the phage T4, revealing how the tape measure protein regulates the process.
www.biorxiv.org/content/10.6...

07.03.2026 11:11 👍 101 🔁 37 💬 6 📌 6
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After >10 years of our lab studying bacterial cGAS-like enzymes, @hobbslabutah.bsky.social finally reconstitutes viral sensing in vitro and discovers how these ancient receptors sense phage protease enzymes to detect virion assembly and activate antiviral immunity

www.biorxiv.org/content/10.6...

06.03.2026 09:00 👍 48 🔁 21 💬 1 📌 0
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Convergent MurJ flippase inhibition by phage lysis proteins - Nature A common mechanism of inhibition of the essential lipid II flippase MurJ by three distinct phage-encoded single-gene lysis proteins provides insights into potential new targets for antimicrobial devel...

Convergent MurJ flippase inhibition by phage lysis proteins www.nature.com/articles/s41...

25.02.2026 19:01 👍 30 🔁 12 💬 0 📌 0
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4am today - Morgestraich! Lights out, lanterns on: Basler Fasnacht begins. 🎭🥁🌠

23.02.2026 06:09 👍 10 🔁 0 💬 0 📌 0
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Another cross-country trip (for a doctoral defense) - quiet office time with a view! 🚆🌊❄️

19.02.2026 10:31 👍 3 🔁 0 💬 0 📌 0
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Excited to share our preprint on integrase directionality here.

www.biorxiv.org/content/10.1...

11.02.2026 18:26 👍 11 🔁 6 💬 0 📌 0
Figure from: Can ecological interactions drive evolutionary outcomes? Evidence from insect host shifts between pa

Figure from: Can ecological interactions drive evolutionary outcomes? Evidence from insect host shifts between pa

A tribe of weevils has cracked a rare evolutionary puzzle: shifting hosts between parasitic and non-parasitic plants across distantly related families. Phylogenomic analysis reveals how plant-plant parasitism creates unique opportun...

https://www.biorxiv.org/content/10.1101/2024.04.03.587887

10.02.2026 16:31 👍 13 🔁 8 💬 1 📌 0
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It's not even carnival yet and feels like spring already ☀️🌇

07.02.2026 13:21 👍 1 🔁 0 💬 0 📌 0

Did not look for phages im this course, but the students found some interesting enterobacteria in different food items... curious what their genomes will show 🪄🧬

05.02.2026 16:04 👍 2 🔁 0 💬 0 📌 0

Possibly, yes! But it is something people may not think about (me included) when using dried herbs / spices in a way that enables replication of those CFUs...

05.02.2026 11:46 👍 1 🔁 0 💬 1 📌 0

This was a sample of dill, I think...

05.02.2026 11:03 👍 1 🔁 0 💬 0 📌 0

Many thanks to Dr. Markus Schuppler, Carmen Saez, and Christian Gübeli for implementation of the course. We have to do it twice in a row because it's so popular!

05.02.2026 10:20 👍 2 🔁 0 💬 0 📌 0
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Reality check at the food microbiology practical course - molds from a sample of dried herbs... 🧫🍂

@contamclub.bsky.social

05.02.2026 10:20 👍 20 🔁 3 💬 5 📌 1
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First events of our initiative debating access to phage therapy in Switzerland took place in Basel over the last weeks - great and constructive debates with the people as well as politicians, patients, clinicians, and regulators!

Together we can make things happen. 🇨🇭🧬🌟

05.02.2026 08:23 👍 12 🔁 1 💬 1 📌 0

It seems that NCBI GenBank is currently not active beyond the repository itself and has also been unresponsive to requests for a while already.

Do you think this may be a transient inconvenience or a sign that we should explore alternatives such as ENA at EMBL-EBI?

03.02.2026 14:40 👍 4 🔁 2 💬 2 📌 0
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Making the home office more social - lunch in the city with university friends 🍝🏙

30.01.2026 19:35 👍 4 🔁 0 💬 0 📌 0

Can also be nice, if the trains are going and are kind-of in time....

29.01.2026 17:22 👍 1 🔁 0 💬 1 📌 0
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Spent most of my working day on silent + comfortable trains and I have rarely been more productive... also: Sunshine in Lausanne! ☀️🧬🇨🇭

29.01.2026 16:41 👍 17 🔁 0 💬 2 📌 0
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🍄Transposon traffic in the mycocosmos🍄
Fascinating work reveals extensive horizontal TE transfer across fungi (@jromeijn.bsky.social, Iñigo Bañales & @mfseidl.bsky.social; doi.org/10.1016/j.cu...). I wrote a Dispatch to prime non-specialists,check it out here: doi.org/10.1016/j.cu....
#TEworldwide

19.01.2026 16:38 👍 41 🔁 14 💬 0 📌 3
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Happy to share our recent preprint:
"DNA-intercalating antiphage molecules trigger abortive infection through mutual destruction and synergize with bacterial immunity"

www.biorxiv.org/content/10.6...

@spp2330.bsky.social, @mibinet.bsky.social, @dfg.de @hhu.de @fzj.bsky.social

14.01.2026 08:57 👍 44 🔁 26 💬 2 📌 0
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a close up of a gorilla eating a strawberry with itv news written on the bottom right ALT: a close up of a gorilla eating a strawberry with itv news written on the bottom right

Massive revision to our paper on relaxed selection of male reproductive genes in gorillas. TL;DR, they are eroding away coincident with the shift to polygyny in gorillas; big bodies no need for good sperm. 🦍 🤷 🧪 #EvoBio #SpermCompetition

www.biorxiv.org/content/10.1...

12.01.2026 14:56 👍 7 🔁 3 💬 0 📌 0
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Secret life of prophages: template-directed synthesis of DNA superstructures via prophage activation and rolling circle replication in bacterial biofilms Extracellular DNA (eDNA) plays crucial roles in biofilm formation and function, yet the role of bacteriophages (phages) in controlling eDNA synthesis, structure and activity remains obscure. Here, we ...

Secret life of prophages: template-directed synthesis of DNA superstructures via prophage activation and rolling circle replication in bacterial biofilms

bioRxiv by Gabriel Antonio S. Minero et al
with @thethormannden.bsky.social, Rikke Louise Meyer

www.biorxiv.org/content/10.6...

11.01.2026 15:12 👍 21 🔁 5 💬 0 📌 0
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Happy new year to everybody - let's make it a good one (though the world seems to be seriously off track...)! 🌟🎉🧬

05.01.2026 16:21 👍 11 🔁 0 💬 0 📌 0
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Identification of proteins influencing CRISPR-associated transposases for enhanced genome editing Whole-genome screening reveals strategies to boost CRISPR-associated transposase genome editing efficiency.

#microsky #synbiosky

www.science.org/doi/10.1126/...

02.01.2026 10:36 👍 22 🔁 12 💬 0 📌 0

IMO knowing when to drop (even temporarily) a project is the hardest thing to navigate as a PI. It depends on so many variables, a lot of them unrelated to the actual science. The call is by definition made with incomplete information - deciding when high risk, high gain is just too risky

30.12.2025 20:03 👍 36 🔁 6 💬 1 📌 0

This story is absolutely wild. Did you know that avocados change sex over the course of a day? And that it's controlled by a single ancient balanced polymorphism? This is flat our crazy

25.12.2025 06:33 👍 212 🔁 78 💬 5 📌 9
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Cold walks and warm delicacies - merry Christmas to all! 🎅🏼🍻

24.12.2025 18:45 👍 4 🔁 0 💬 0 📌 0