Jia-Xing Yue (岳家兴)'s Avatar

Jia-Xing Yue (岳家兴)

@iamphioxus

PI of @EvomicsLab.bsky.social (www.evomicslab.org) at Sun Yat-sen University Cancer Center (SYSUCC) Alumni of @cnrs.fr @ircan.bsky.social @RiceUniversity @NanjingUnivers1

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17.11.2024
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Latest posts by Jia-Xing Yue (岳家兴) @iamphioxus

very happy to have this work published in mbe @molbioevol.bsky.social can now use phyloHessian to get a (hopefully) improved div time & subs rate estimate, particularly for deep-time or fast‑evolving lineages github.com/evolbeginner... #julialang #iqtree #mcmctree #molecularclock

12.03.2026 02:32 👍 16 🔁 4 💬 2 📌 0
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Abstract Submission - Yeast Genetics Meeting 2026 Visit our website to learn more.

The abstract submission deadline for #Yeast26 has been extended to next week, March 12! 📣

GSA is committed to meeting the needs of our genetics community and supporting our scientists through challenging times.

Join us at the stunning Asilomar. Submit your abstract now: buff.ly/XmP8Z2i

06.03.2026 23:00 👍 1 🔁 1 💬 0 📌 0
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David Botstein, a titan within the scientific community, died last week. GSA mourns his passing and celebrates his legacy.

Read more about his significance to our community in this thread ⬇️🧵

03.03.2026 19:00 👍 17 🔁 9 💬 1 📌 0
a headshot of David Botstein

a headshot of David Botstein

We are deeply saddened to share the news of the passing of David Botstein, a towering figure in modern #genetics and a foundational force behind SGD.
www.yeastgenome.org/blog/in-memo... #yeast #modelOrganism

02.03.2026 15:39 👍 52 🔁 29 💬 0 📌 3
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Yeast | Microbiology Journal | Wiley Online Library Yeast is a microbiology journal for research in the rapidly moving field of yeast biology. We publish the most significant developments in unicellular fungi.

ANNOUNCEMENT: The webpage for the upcoming yeast meetings of 2026 has recently been updated. Have a look at it to find out which exciting #yeast #conferences are ahead!!! 😀

onlinelibrary.wiley.com/page/journal...

02.03.2026 16:59 👍 8 🔁 6 💬 0 📌 0
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The new issue of @genomeresearch.bsky.social is now live. Follow the link to new research on chromosome engineering in 8p syndrome, convergent evolution in arid rodents, and more! tinyurl.com/Genome-Res-3...

02.03.2026 21:33 👍 4 🔁 2 💬 1 📌 1
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GitHub - yjx1217/LRSDAY: LRSDAY: Long-read Sequencing Data Analysis for Yeasts LRSDAY: Long-read Sequencing Data Analysis for Yeasts - yjx1217/LRSDAY

📢 It has been a few years since we updated LRSDAY last time, during which the downloading URLs of some of its dependencies have become inaccessible. I've just implemented a fix in GitHub make the automatic installation script work again.
github.com/yjx1217/LRSDAY

25.02.2026 04:58 👍 2 🔁 0 💬 0 📌 0
Jia-Xing Yue (Sun Yat-sen University)

Jia-Xing Yue (Sun Yat-sen University)

Jia-Xing Yue (@iamphioxus.bsky.social), principal investigator at Sun Yat-sen University, is one of the new members of the GBE editorial board. He is an expert in evolutionary genomics, genome instability, telomeres, aneuploidy, cancer, and yeast.

#societyjournal

11.02.2026 09:18 👍 6 🔁 1 💬 0 📌 0

Thx Daniel! :-)

10.02.2026 04:37 👍 0 🔁 0 💬 0 📌 0

Honored to serve @genomebiolevol.bsky.social and the greater @official-smbe.bsky.social community! 🫡

08.02.2026 00:02 👍 12 🔁 5 💬 1 📌 0
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Homepage - Yeast Genetics Meeting 2026 Visit our website to learn more.

Honored to serve on the Yeast Genetics Meeting Program Committee of Evolution & Population Genetics. Welcome for meeting registration and abstract submission, especially on our Evolution & Population Genetics program! genetics-gsa.org/yeast-2026/
@genetics-gsa.bsky.social #Yeast26

30.01.2026 06:14 👍 5 🔁 2 💬 0 📌 0
SMBE is now on Weixin/WeChat

SMBE is now on Weixin/WeChat

SMBE is now on Weixin/WeChat!

Stay up-to-date with the latest news, events, and articles published in @molbioevol.bsky.social and @genomebiolevol.bsky.social

Follow the @officialSMBE account, or scan the QR code with the app.

🔗 academic.oup.com/smbejournals/pages/wechat

#society

18.12.2025 11:22 👍 8 🔁 4 💬 0 📌 0
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29.07.2025 05:39 👍 3 🔁 0 💬 0 📌 0

It is great to have @petrovadmitri.bsky.social here at Sun Yat-sen University Cancer Center to give us an highly inspiring talk on “Fitness landscape of tumor suppressor genes in lung cancer ”. Tour de force experiments, mind blowing results, and exciting bench-to-bed perspectives!

29.07.2025 04:20 👍 3 🔁 1 💬 1 📌 1
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First #SMBE meeting for our lab!Definitely a memorable experience. Already looking forward to the next one! @official-smbe.bsky.social #SMBE2025

25.07.2025 15:47 👍 8 🔁 2 💬 0 📌 0
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Complex genetic variation in nearly complete human genomes - Nature Using sequencing and haplotype-resolved assembly of 65 diverse human genomes, complex regions including the major histocompatibility complex and centromeres are analysed.

Two papers in today's issue of @nature.com ‬: 1) we assemble 65 genomes to near completion, including centromeres and the MHC. tinyurl.com/3huhax6w. 2) we sequence 1,019 genomes from the 1kGP with long reads, revealing SVs down to low allele frequencies tinyurl.com/wbx3we9x.

23.07.2025 15:12 👍 55 🔁 24 💬 1 📌 2
Group photo with all oral speakers.

Group photo with all oral speakers.

Prof. Dmitri Petrov delivering his talk.

Prof. Dmitri Petrov delivering his talk.

Super honored to have chance to co-organize the #SMBE2025 Symposium on Experimental Evolution, together with @jingli-0512.bsky.social and Dao-Qiong Zheng. Thank @petrovadmitri.bsky.social for serving as our invited speaker. Also thank all the oral/poster presenters and audience. @OfficialSMBE

22.07.2025 23:50 👍 14 🔁 3 💬 0 📌 1
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📣Our #SMBE 2025 Symposium (No. 3) on Experimental Evolution will be held today (7.22, Tuesday) at 10:30 in Room 4, Building No. 8. An associated poster session will be held at 14:00 (poster number: S3-P01~P16). Welcome to join! let's study evolution in action! 🥳 🎉 @official-smbe.bsky.social

21.07.2025 23:20 👍 7 🔁 4 💬 0 📌 0
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📅 The day is today!

#SMBE2025 in Beijing starts now, as the registration desk opens to all participants.

Join us for five days full of the latest discoveries in molecular biology and evolution 🧬 We hope all attendees enjoy the many opportunities for discussion and networking among our community.

20.07.2025 04:09 👍 21 🔁 5 💬 1 📌 0
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Gene regulatory networks and essential transcription factors for de novo-originated genes Nature Ecology & Evolution - A combination of computational methods applied to single-cell RNA sequencing data and genetic experiments shows that a small number of transcription factors are...

Our latest paper is out: rdcu.be/ev6Ym — one of my favorite projects. It began about 8 years ago when Nobel laureate Torsten Wiesel asked me: what transcription factors regulate new genes? I had no idea then. Now we have some answers.

15.07.2025 14:27 👍 112 🔁 37 💬 3 📌 3

Welcome to attend our SMBE2025 Symposium on Experimental Evolution. Co-organized by Dao-Qiong Zheng, @‪jingli-0512.bsky.social‬ and myself.

17.06.2025 01:45 👍 6 🔁 2 💬 0 📌 0

Talks by:

@petrovadmitri.bsky.social

Shuqing Xu
@jingli-0512.bsky.social
@fitz-james-lab.bsky.social
@michael-barnett.bsky.social
Liye Zhang
Anjali Mahilkar
Tatiana Bellagio
@marcofumasoni.bsky.social
Can Liu
Alexander Sastokas

17.06.2025 01:44 👍 0 🔁 0 💬 0 📌 0

Very excited about this work by @mrazo.bsky.social in collaboration with www.madhavmani.com bsky.app/profile/mraz... I am so lucky to be able to collaborate with such brilliant people! Learned a lot. This is our first foray into ML approaches and I am quite taken with their power 1/n

15.05.2025 18:16 👍 26 🔁 9 💬 1 📌 0
CSHL Keynote, Dr. Steven McCarroll, Harvard Medical School + Broad Institute
CSHL Keynote, Dr. Steven McCarroll, Harvard Medical School + Broad Institute YouTube video by CSHL Leading Strand

Keynote talk from Steven McCarroll from last weeks Biology of Genomes conf. My favorite talk of the whole meeting! #bog25 youtu.be/BCRAlmFv7ag?...

15.05.2025 00:39 👍 51 🔁 8 💬 3 📌 1
Evomics Lab – Exploring Omics in the Light of Evolution

📢 3 Postdoc positions available in @evomicslab.bsky.social
targeting on genome instability evolution of both yeast and human genomes. Both computational genomics and experimental genomics backgrounds are welcome! 🧬🧑‍💻🧪 For more information, see evomicslab.org or send me a message!

28.04.2025 06:17 👍 5 🔁 5 💬 0 📌 0
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Uncalled4: a toolkit for nanopore signal alignment, analysis and visualization of DNA and RNA modifications.

www.nature.com/articles/s41...

28.03.2025 17:23 👍 48 🔁 26 💬 1 📌 1
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1/35 New paper out! @jamesTstroud and I dive into why long-term studies are crucial for understanding evolution. They reveal processes impossible to detect in short timescales and capture rare events that transform our understanding of evolutionary dynamics.

www.nature.com/articles/s41...

19.03.2025 19:18 👍 334 🔁 117 💬 5 📌 8
Research opportunities | Landry Lab

We are looking for a postdoc in #EvolutionarySystemsBiology.
Exciting science, amazing team, wonderful city!
landrylab.ibis.ulaval.ca/research-opp...
#evolution #synbio #systemsbiology #genomics

23.02.2025 16:46 👍 67 🔁 74 💬 0 📌 1
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Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

Glad to see the copy-edited version of our VRPG paper formally published in the latest issue of @genomeresearch.bsky.social ! We developed VRPG as a novel visualization framework for intuitively exploring pangenome graphs in a linear-reference-projected context.
genome.cshlp.org/content/35/2...

15.02.2025 07:08 👍 6 🔁 3 💬 0 📌 0
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The new issue of @genomeresearch.bsky.social is now live! Follow the link to new research on homeodomain–DNA cooperative dimerization in developmental defects, nucleic quasi-primes, and more! tinyurl.com/Genome-Res-3...

14.02.2025 21:42 👍 6 🔁 1 💬 0 📌 0