#SEQBIM2025 is about to start, Bonsai presents 4 works this year in Nantes seqbim.cnrs.fr/seqbim-2025/...
24.11.2025 09:10
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#SEQBIM2025 is about to start, Bonsai presents 4 works this year in Nantes seqbim.cnrs.fr/seqbim-2025/...
Ca n'est pas si souvent, un article publié dans Nature met ma communauté à l'honneur (la bioinformatique des séquences). Je vous raconte ?
www.nature.com/articles/d41...
Yohan Hernandez-Courbevoie chaired by Maxime Crochemore just before presenting REINDEER2 at #SPIRE2025 in London
Achievement unlocked: defend your habilitation thesis on the same day than your partner. That was quite a science + celebration day, thanks to all involved 💙✨
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A wonderful day for @bonsaiseqbioinfo.bsky.social, with @camillemrcht.bsky.social's and @npmalfoy.bsky.social's HDR defenses.
Congrats for the amazing work!
It's a great chance for the team to have you both!
Excited to attend #SEA2025 this week in Venice! I'll present our work on simd-minimizers on Thursday! Meanwhile, you can take a look at the slides here: igor.martayan.org/slides-sea-2...
And one from @imartayan.bsky.social and @curiouscoding.nl at SEA in Venice on simd computation of minimizers
Two talks for Bonsai this Thursday, one from @mikael-salson.univ-lille.fr during ISMB presenting a compressed representation for viral MSAs,
🖥️🧬: The ISMB 2025 proceedings are out! I’m looking forward to seeing many presentations on this work next week :). academic.oup.com/bioinformati...
I was delighted to participate to @jobim2025.bsky.social. I had the chance to present Vizitig twice, during the session on data structures and algorithms, and during the mini-symposium on Pangenomics.
Many thanks to the organizers for this amazing conference !
Among other flash talks @imartayan.bsky.social presented recent techniques for rapid assessment of pangenome openness, and @bdegardins.bsky.social did a demo of Vizitig for exploring different small pangenomes
Congrats to both and to other award winners 🎊
#JOBIM2025 glad to have Jana Ebler as keynote speaker in our mini symposium on graphs for pangenomics
#JOBIM2025 Mathilde Girard ends the session with a simple but effective idea: re oder the reads before using an off the shelf compressor to improve compression gain
#JOBIM2025 @bdegardins.bsky.social presents his PhD work on Vizitig, a multi sample graph exploration tool, with a focus on RNA - this afternoon we'll do a demo on pangenomes with the same tool
Bonsai delegation enjoying #JOBIM2025 🌴and Bordeaux's weather
Our first keynote speaker Anouck Necsulea from LBBE on genomics for understanding phenotypic diversity, chaired by her LBBE fellow, post-punk and IFB master @komo625.bsky.social #JOBIM2025
On day 3, afternoon
Bonsai co-organises the Mini-symposium: Methods for Interfacing with Graphs of Genomic Sequences: novel pangenome
With two flash talks by @imartayan.bsky.social and @bdegardins.bsky.social
11:10 – 11:30 OReO: Optimizing Read Order for practical compression by Mathilde Girard
10:50 – 11:10 Reindeer2: practical abundance index at scale by Yohan Hernandez Courbevoie
On day 3, morning in Amphi D
10:30 – 10:50 Vizitig: context-rich exploration of sequencing datasets by @bdegardins.bsky.social
On day 2, posters :
122 Large Language Models-driven Reconstruction of Sequence Read Archive Metadata for Cancer Research by Fiona Hak
120 Bridging gene-level and sequence-level pangenome graph to explore microbial diversity by Hanin Ali
All Bonsai related communications during #JOBIM2025. Come meet us 👇🏻
Could a "simple" read reordering have impact on the compression of your fasta file? Find out in this publication from Mathilde Girard, PhD student in the group.
Cyanotype workshop with the beach wrack to end our stay 🦀
Visit of the marine station AND simd tutorial by @imartayan.bsky.social, pretty much sums up how wide bioinformatics can be
Ouverture des candidatures au Prix de thèse Gilles Kahn décerné par la Société informatique de France
www.socinfo.fr/recherche/pr...
Members enter the sea as the sun goes down
A picture of the group with pretty dusk colors and the beach in the background
Coastal landscape
The group with tents
Bonsai goes camping by the shore ☀️
I worked with Thomas during a three months research visit during his PhD, and it resulted in a paper in NAR. I highly recommend him. doi.org/10.1093/nar/...