bonjour !
11.03.2026 11:55
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bonjour !
Let's get ready for a full month of training in image analysis in @pasteur.fr , this summer!
Are you interested in learning how to do bioimage analysis? For light microscopy? for cryo-EM? And for cellular cryo-EM?
Stay tuned, Pasteur offers access to THREE courses, this June.
👇🎓
a printed object showing the layer lines. On the bottom how to replicate those lines in PDMS to make a microfluidic device
the microfluidic channels
Do you know those annoying layer lines you get with FDM 3D printers? Those layers you try to avoid or hide?
What if I tell you we can use them to make 15-micrometer-tall microfluidic channels?
chemrxiv.org/doi/full/10.... 1/5 #chemsky the
A must watch smart microscopy talk! 🙏🤩
I had a great time at Uni Copenhagen giving a talk about How Generative AI impacts Bio-Image Data Science this week. You find my slides online and a recording will be shared soon!
doi.org/10.5281/zeno...
Big thanks to @danishbioimaging.bsky.social, @claraprats.bsky.social and team for hosting me!
A cochlea imaged in light-sheet microscopy (right) with staining for spiral ganglion neurons (red) and inner hair cells (blue). You will develop AI-based methods to analyze these structures, for example via segmentation of the individual cells (right) that will support gene therapy development for hearing loss and a better overall understanding of the anatomy of hearing.
Looking for a PhD position at the intersection of AI, imaging, and gene therapy? Apply for this position in my lab: tinyurl.com/2a2v6tvx
Part of sfb1690.uni-goettingen.de to study hearing, vision, and more.
Plus, you can create pretty pictures as the one below :).
New preprint out!
In this study, we introduce NanoFLex, a strategy that combines #HaloTag variants with #nanobodies -based immunolabeling to enable rapid, OneStep-IF #lifetime #multiplexing. Possible due to SmartSecondaries fused to #HaloTag from @nanotag.bsky.social: www.biorxiv.org/content/10.6...
Appose processing hackathon with @jytinevez.bsky.social, @ctrue.bsky.social, @gaellel.bsky.social, @strigaud.bsky.social, Carlos and Thomas . Simple POC with Java calling python through Appose to flip blocks. Promising!
PAPER OUT ✨ How can we make smart microscopy more interoperable? What are the technical and cultural challenges? 30+ people from academia and industry propose a roadmap: doi.org/10.1515/mim-... Also a review of applications and repo of implementations. Join the discussion! smartmicroscopy.github.io
Does anyone know of an anti mStayGold antibody that works for immunoblots / IP? Anyone tried the one from HUABIO (not even sure that’s a real company)? Thanks!
Morphological parameters can capture emergent properties of dynamic disordered cytoskeletal networks https://www.biorxiv.org/content/10.64898/2026.03.01.708800v1
Yang, H., Meyer, F., Huang, S., Yang, L., Lungu, C., Olayioye, M. A., Buehler, M. J., & Guo, M. (2024). Learning collective cell migratory dynamics from a static snapshot with graph neural networks. PRX Life 2, 043010. #EpithelialMechanics
doi.org/10.1103/PRXL...
#ImageOfTheMonth March 2026
Dividing Arabidopsis epidermal cells imaged by confocal microscopy after expansion. Microtubules guided cell plate formation revealed in 3D with depth-code.
Image: Magali Grison @lbm-bordeaux.bsky.social @gtexm.bsky.social
#Microscopy #PlantScience #CellBiology
Excited to share our new paper (CVPR 2026 🚀): "MuViT: Multi-Resolution Vision Transformers for Learning Across Scales in Microscopy" which enables local predictions to use global context.
Great work led by @albertdm.bsky.social & another fun collab w @gioelelamanno.bsky.social! @scadsai.bsky.social
Our first 'Show & Tell Series' webinar, presented last week, is now available on YouTube.
Watch here: www.youtube.com/watch?v=E-pi...
We hope it’s useful to the community - please share with anyone who may be interested #VolumeEM #Bioimaging
I think there is a need for a complete re-think for organoid modeling.
As long as the architecture of organoids that you produce is not directly compared to a 3D map of the organ (say, a fallopian tube) or disease to be modeled, it will be approximate.
More here: www.science.org/doi/full/10....
Interested in doing a PhD in tumor mechanobiology?
At Université Paris-Saclay, the upcoming PhD selection process is open, and I’m looking to put forward a candidate to join my lab.
If you’re excited about uncovering how mechanical signals regulate tumor progression, please get in touch!
Nature news & views:
'AI offers way to image and assess clinical cell samples'
www.nature.com/articles/d41...
Great visual guide for how to make interpretable plots in R.
Happy to share a write-up of our recent publication @natcomms.nature.com demonstrating
how circumferential actomyosin-driven endothelial cell contractions constrict vessel diameter, providing insights into mechanisms of normal vessel remodelling and CCM.
www.bdr.riken.jp/en/news/rese...
Finally!! Our Roadmap for Interoperability in Smart Microscopy is now published in #MethodsinMicroscopy @degruyterbrill.bsky.social
👉 check it out: doi.org/10.1515/mim-...
Check out our new paper!
iCLAP: an innovative method for integrable codetection
of low-abundance antigens with highplex
immunostaining
Read more about iCLAP here: www.nature.com/articles/s41...
Mountain, blush sky and snow
In the #BigVolumeBrowser news, there is a new awesome video tutorial about it made by certified magician Johanna M. Dela Cruz.
Check it out: www.youtube.com/watch?v=c0fr... (1/2)
Our BehaveAI paper has just come out!
Easy & effective tracking & behavioural classification, even with tiny (2px), fast moving, camouflaged objects.
Paper: doi.org/10.1371/jour...
Download: github.com/troscianko/B...
@uniexecec.bsky.social @kevinjgaston.bsky.social @jimamclgalloway.bsky.social
How self-driving cars motivated us to build a universal diagnostics platform for malaria/Tb. The arc of technology is unpredictable at best.
m.youtube.com/watch?v=gbeg...
Congratulations @ivaskalab.bsky.social team for this study on the role of vibration in vocal cord cancer! Was a fun collaboration 🎤🎤
Lång, E., Lång, A., Blicher, P., Rognes, T., Dommersnes, P. G., & Bøe, S. O. (2024). Topology-guided polar ordering of collective cell migration. Science advances, 10(16), eadk4825. #EpithelialMechanics doi.org/10.1126/scia...
On the occasion of International Women’s Day at @crg.eu, we are pleased to welcome :
Marie-Émilie Terret (CIRB, @college-de-france.fr), who will speak on
“Mechanics of Oocyte Divisions”
Hosted by @adelaljord.bsky.social
📅 When? Monday, March 9th, 2026 - 12:00–13:00 - Aula Room, @prbb.org
Thanks for highlighting our work on combining AI-based organelle dynamics detection in phase contrast with fluorescence!
www.nature.com/ncomms/edito...
@natcomms.nature.com and Nelio Rodriguez. Spearheaded by @wl-stepp.bsky.social with collaborators @jclandoni.bsky.social @maweigert.bsky.social
