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Typas Lab

@typaslab

Systems Microbiology @EMBL, combining high-throughput approaches & mechanism in bacteria, antibiotics, microbiome, infection, species diversity, cell envelope https://www.embl.org/groups/typas/

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08.11.2023
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Latest posts by Typas Lab @typaslab

The increased mutation rate of DNA-repair–deficient mutators accelerates resistance evolution in bacteria and cancer. In a great collaboration with @mulkern.bsky.social, we find that DNA-damaging antibiotics can turn this advantage into a liability—but only for certain genotypes.

23.02.2026 14:09 👍 10 🔁 5 💬 1 📌 0

New #AMR pre-print
Combining antibiotics with genotoxins can efficiently suppress bacterial in high throughput experimental models.
www.biorxiv.org/content/10.6...
Fun collaboration with Nassos Typas lab led by @mulkern.bsky.social

23.02.2026 09:09 👍 15 🔁 6 💬 1 📌 0

Cancer therapies exploit DNA repair defects to kill tumours. We asked whether the same logic could constrain antibiotic resistance evolution...

www.biorxiv.org/content/10.6...

21.02.2026 07:37 👍 11 🔁 8 💬 1 📌 0
Text: We seek: Game changers in infection research; Human Microbe Alliance for Universal Health (HUMAN) program; in the background a night sky with a shooting star and an electron micrograph of different bacteria

Text: We seek: Game changers in infection research; Human Microbe Alliance for Universal Health (HUMAN) program; in the background a night sky with a shooting star and an electron micrograph of different bacteria

Are you a game changer in infection research? Apply for a HUMAN junior research group leader position (with professorship and tenure options) at the HZI by March 30!

Infection Biology: jobs.helmholtz-hzi.de/job/Braunsch...

AI in Health and Infection Research: jobs.helmholtz-hzi.de/job/Braunsch...

20.02.2026 07:52 👍 5 🔁 4 💬 0 📌 0

Registration is open for the inaugural GRC conference in the Function of Evolving Systems. Aug 9-14, 2026, Waterville Valley. Truly stellar speaker lineup. Student/postdoc fellowships are available! Please come join us! www.grc.org/function-of-... @joybergelson.bsky.social

29.01.2026 15:03 👍 42 🔁 37 💬 1 📌 2
Call for the position as Helmholtz Junior Research Group Leaders at the Helmholtz Institute for RNA-based Infection Research or Helmholtz Institute for Pharmaceutical Research Saarland

Call for the position as Helmholtz Junior Research Group Leaders at the Helmholtz Institute for RNA-based Infection Research or Helmholtz Institute for Pharmaceutical Research Saarland

Join the HZI as a Junior Research Group Leader at @helmholtz-hiri.bsky.social or @helmholtzhips.bsky.social!
We’re seeking exceptional postdocs for the @helmholtz.de Investigator Groups program. Shape cutting-edge research in infection biology & apply by Feb 15!
jobs.helmholtz-hzi.de/job/Saarbr%C...

29.01.2026 13:07 👍 11 🔁 10 💬 2 📌 1
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EMBL International PhD Programme - summer recruitment 2026! 👀

Research groups across EMBL are recruiting now! www.embl.org/about/info/e...

Don’t miss this opportunity to receive dedicated mentoring while doing interdisciplinary research.

19.02.2026 09:41 👍 12 🔁 13 💬 0 📌 1

Excited to announce my upcoming @snsf.ch Ambizione research group at EPFL on bacteria-host interactions, combining systems approaches and microphysiological models.
🚨 We have an open PhD position! More info on projects and how to apply here: elisabettacacace.github.io/BHI-Lab/
🧪

06.02.2026 15:50 👍 20 🔁 11 💬 5 📌 0

It has been two weeks since the unexpected death of Peer Bork, and all of us in his research group are deeply missing him. His scientific vision brought us together as a team, and we are immensely grateful for the time we spent together. 🧵

30.01.2026 15:05 👍 68 🔁 24 💬 2 📌 0
Interview with Prof. Dr. Dmitri Petrov
Interview with Prof. Dr. Dmitri Petrov YouTube video by Leibniz-Institut für Alternsforschung - FLI e.V.

➡️ Prof. Dr. Dmitri Petrov from the School of Humanities and Science | Department of Biology, Stanford University, spoke today at the @leibnizfli.bsky.social about “Barcoding Fitness Landscapes of Tumorigenesis”. Before he gave his lecture, we had the opportunity to interview him.

🎤 bit.ly/4r66mxG

22.01.2026 14:54 👍 2 🔁 2 💬 0 📌 0
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📢 Prof. Dr. Dmitri Petrov from the School of Humanities and Science | Department of Biology, Stanford University, will give a lecture on “Barcoding Fitness Landscapes of Tumorigenesis” at the @leibnizfli.bsky.social on January 22, 2026.

👉 More information: bit.ly/4pGtqSu

16.01.2026 09:40 👍 2 🔁 2 💬 0 📌 0
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EMBL is deeply saddened by the passing of our Interim Director General Peer Bork, a pioneering scientist who left an indelible imprint on life science research in Europe and beyond.

We extend our deepest condolences to his family, friends, and colleagues.

www.embl.org/news/people-...

22.01.2026 07:40 👍 109 🔁 44 💬 1 📌 4
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In remembrance of Peer Bork  | EMBL EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General. 

We mourn the passing of Peer Bork, EMBO Member since 2000: https://www.embl.org/news/embl-announcements/in-remembrance-of-peer-bork/

17.01.2026 02:52 👍 88 🔁 36 💬 5 📌 4
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20 | Peer Bork and the scientific candy shop Podcast Episode · Night Science · 09/02/2022 · 29m

20 | Peer Bork and the scientific candy shop
Apple: podcasts.apple.com/us/podcast/n...
Spotify: open.spotify.com/episode/17ux...

18.01.2026 00:52 👍 8 🔁 4 💬 0 📌 0
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Peer Bork died yesterday 💔 which shocked me. In 2003 I did a short-term fellowship in Peer’s lab because I idolized him. I met Martin there & we wrote this paper together. Peer was great at bringing people together; a master collaborator with a rare ability to think up big ideas.

18.01.2026 00:52 👍 43 🔁 6 💬 1 📌 0
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In remembrance of Peer Bork  | EMBL EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.

This is such hard news to process. Such an amazing scientist and inspiration for so many of us.
www.embl.org/news/embl-an...

16.01.2026 18:01 👍 38 🔁 21 💬 1 📌 0

Super excited to share our new selection-free CRISPR-Cas9 editing protocol for Dictyostelids, generating 80% KO and 30% KI efficiencies without selection in D. discoideum, and being effective in Dictyostelid species that diverged millions of years ago! www.biorxiv.org/content/10.1...

25.03.2025 20:33 👍 16 🔁 10 💬 0 📌 0
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HT-PELSA, a new proteomics tool by EMBL researchers, processes samples 100x faster and works directly with complex crude cell, tissue, and bacterial lysates – developments which could accelerate drug discovery and basic biological research 💊

🔗 www.embl.org/news/science...

05.11.2025 10:09 👍 28 🔁 10 💬 2 📌 0

Happy to see our HT-PELSA paper now published in @natsmb.nature.com 🎊 Big thanks for the constructive review process! 📖Read the manuscript here (www.nature.com/articles/s41...) & check the thread for additional information ⬇️

05.11.2025 10:15 👍 37 🔁 14 💬 0 📌 1
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Isolation, engineering and ecology of temperate phages from the human gut - Nature Human host-associated cellular products may act as induction agents for bacteriophages.

Very excited to share the latest work from our lab, which was published today in Nature!
nature.com/articles/s41...

PhD graduate and now post-doc Sofia Dahlman, along with co-senior author Sam Forster from The Hudson and other researchers from our lab and others.

15.10.2025 21:40 👍 186 🔁 75 💬 7 📌 3
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How nutrient starvation impacts the gut microbiome - Nature Microbiology In this Perspective, Estrela and Huang discuss nutrient starvation in the context of the gut microbiome, outlining what is known and highlighting key questions for future research to address knowledge gaps.

#Perspective

Estrela and Huang discuss nutrient starvation in the context of the gut microbiome, outlining what is known and highlighting key questions for future research to address knowledge gaps.

#MicroSky #MicrobiomeSky 🦠

www.nature.com/articles/s41...

01.10.2025 17:56 👍 38 🔁 15 💬 0 📌 1
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Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota - Nature Microbiology Structural and functional characterization of the β-barrel assembly machinery complex in Bacteroidota reveals a distinct, seven-component complex with a large extracellular domain that may enable β-barrel–surface lipoprotein complex assembly.

Our paper on the Bacteroidota BAM complex is out in @natmicrobiol.nature.com! With @madejmar.bsky.social

We found that BAM in Bacteroides and Porphyromonas gingivalis has a distinct architecture from BAM in Proteobacteria.

doi.org/10.1038/s415...

02.10.2025 06:20 👍 54 🔁 23 💬 4 📌 2
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E15 Groups The Helmholtz Institute for RNA-based Infection Researchopens a call for

Looking to start your own lab? 🧬🧪 The Helmholtz Institute Würzburg (HIRI) is offering group leader positions in RNA biology, RNA medicine & RNA technology. Apply by October 31 at www.helmholtz-hiri.de/en/jobs-tale...

13.10.2025 13:30 👍 18 🔁 27 💬 0 📌 0

Great collaboration inside and outside @embl.org with @kiranrpatil.bsky.social @indraroux.bsky.social @zimmermannlab.bsky.social @zellerlab.bsky.social
@EMBLHeidelberg

13.10.2025 07:52 👍 4 🔁 0 💬 0 📌 0

We systematically compared essential genes, protein domains & non-coding elements, uncovering toxic modalities & functional redundancy as key aspects of species-specific essentiality.

13.10.2025 07:48 👍 4 🔁 1 💬 1 📌 0
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Excited to share our preprint led by Carlos Voogdt et al

We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...

13.10.2025 07:47 👍 85 🔁 45 💬 2 📌 4
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Two group leader positions available in the broader areas of RNA science, RNA technologies, and RNA medicine. Attractive packages and a great environment. Come and join us at Helmholtz RNA Würzburg, Bavaria.

08.10.2025 21:45 👍 68 🔁 80 💬 1 📌 1
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High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNV Accurate detection of mutations within bacterial species is critical for fundamental studies of microbial evolution, reconstructing transmission events, and identifying antimicrobial resistance mutati...

Precisely calling mutations across hundreds of bacterial isolates has been hard, requiring manual filtering and expertise.

Until now, using AccuSNV.

Herui Liao trained an ML model based on our previous meticulously called SNVs.
www.biorxiv.org/content/10.1...

29.09.2025 19:45 👍 72 🔁 34 💬 2 📌 1
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📣The 2026 ERC Consolidator Grant competition is now open! 📣

Already preparing your proposal? Info links ⬇️

Info for applicants 👉 buff.ly/PSbeUxX

Application portal 👉 buff.ly/mauZoqo

Deadline: 13/01/26

General info on #ERCCoG 👉 buff.ly/KCN6GTh

26.09.2025 14:30 👍 17 🔁 14 💬 0 📌 1
Bildschirmpräsentation mit der Vita von Prof. Dr. Lisa Maier, Mikrobiologin an der Uni Tübingen, zur Verleihung des Hauptpreises der DGHM in Jena.

Bildschirmpräsentation mit der Vita von Prof. Dr. Lisa Maier, Mikrobiologin an der Uni Tübingen, zur Verleihung des Hauptpreises der DGHM in Jena.

Mikrobiologin Prof. Dr. Antje Flieger liest die Laudatio für Prof. Dr. Lisa Maier zur Verleihung des Hauptpreises der DGHM in Jena. Preisträgerin Lisa Maier steht links neben ihr.

Mikrobiologin Prof. Dr. Antje Flieger liest die Laudatio für Prof. Dr. Lisa Maier zur Verleihung des Hauptpreises der DGHM in Jena. Preisträgerin Lisa Maier steht links neben ihr.

🏆 Fighting the Gender Award Gap: Microbiologist Prof Dr Lisa Maier from @unituebingen.bsky.social received the main award of the German Association for #Microbiology and Hygiene at the #DGHM meeting in Jena. Congratulations to @lisamaierlab.bsky.social we are proud of you! 💜
📸 Gabriele Pradel

23.09.2025 08:39 👍 38 🔁 10 💬 1 📌 1