Jonathan Wirsich's Avatar

Jonathan Wirsich

@jwirsich

EEG-fMRI, multimodal connectomics

112
Followers
206
Following
10
Posts
26.11.2024
Joined
Posts Following

Latest posts by Jonathan Wirsich @jwirsich

Post image

New PhD and post-doc job openings!

Join me and Prof. Nina Kazanina @ Uni Geneva, Switzerland, to take part in an exciting project on relations and binding in language and vision, explored with cutting-edge neurophysiology (#iEEG and MEG).

Full details in the job offer below.

30.01.2026 10:41 ๐Ÿ‘ 28 ๐Ÿ” 18 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 4
Introduction to Principles of MRI โ€” Principles of MRI

For 15(!) years Iโ€™ve been teaching introductory #MRI to grad students, and struggled to find a textbook for a wide variety of backgrounds. I'm happy to share an online textbook I created, fully open source (including code for generating figures and plots shown):
larsonlab.github.io/MRI-educatio...

10.01.2026 07:42 ๐Ÿ‘ 73 ๐Ÿ” 35 ๐Ÿ’ฌ 4 ๐Ÿ“Œ 1
Final Program 2026

It's snowing! Right on time to ensure next week #ABIM2026 will be unforgettable from the morning enjoyment of the Alps to the afternoon science fest. โ›ท๏ธ Speaking of which, our full program (including the abstracts booklet) is online, check it out: www.unige.ch/ABIM/program

08.01.2026 15:12 ๐Ÿ‘ 6 ๐Ÿ” 2 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
GEDAI โ€” gedai

Happy to share that our #Python implementation of GEDAI (Generalized Eigenvalue De-Artifacting Instrument) is now available ๐Ÿ ๐Ÿ’ป ๐Ÿง 
neurotuning.github.io/gedai/dev/in...

08.01.2026 13:33 ๐Ÿ‘ 4 ๐Ÿ” 5 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Maรฎtre assistant-e - Fonds National (6667)

"Maรฎtre-assistant.e" position available โ€” more information at this link: jobs.unige.ch/www/wd_porta...

16.12.2025 08:04 ๐Ÿ‘ 3 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

The best brain-machine interface remains the mouth. Evolution spent 4B years of evolution on R&D developing the device, so I guess it's not that surprising. Yet it still rarely appears as a baseline in evaluations of new devices.

01.12.2025 13:28 ๐Ÿ‘ 47 ๐Ÿ” 8 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Two posts from Bluesky. The first one shows a figure from a paper published in Nature Scientific Reports full of totally incoherent AI fabricated gibberish words. The other a comment on a recently published paper by eLife discussing the paper and its peer reviews which were published along with the paper.

Two posts from Bluesky. The first one shows a figure from a paper published in Nature Scientific Reports full of totally incoherent AI fabricated gibberish words. The other a comment on a recently published paper by eLife discussing the paper and its peer reviews which were published along with the paper.

Nature Sci Rep publishes incoherent AI slop. eLife publishes a paper which the reviewers didn't agree with, making all the comments and responses public with thoughtful commentary. One of these journals got delisted by Web of Science for quality concerns from not doing peer review. Guess which one?

27.11.2025 13:35 ๐Ÿ‘ 156 ๐Ÿ” 69 ๐Ÿ’ฌ 4 ๐Ÿ“Œ 8
eLife Assessment

This important study reports the results of efforts to replicate two phenomena of significant interest to early-career scientists and scientific policymakers: the Matthew effect and the early-career setback effect. Several previous studies of these effects have focused on early-career researchers with grant proposals that fell just below or just above a funding threshold. Those just above the threshold were more likely to be successful when they applied for funding later in the career (an example of the well-known Matthew effect), while those just below were more likely to go on to have stronger publication records (the early-career setback effect). In this study the Matthew effect was found to be robust across funders, and to generalize from those close to the funding threshold to the whole population. The early-career setback effect was not robust across funders and did not generalize to the whole population. The evidence reported is convincing.

eLife Assessment This important study reports the results of efforts to replicate two phenomena of significant interest to early-career scientists and scientific policymakers: the Matthew effect and the early-career setback effect. Several previous studies of these effects have focused on early-career researchers with grant proposals that fell just below or just above a funding threshold. Those just above the threshold were more likely to be successful when they applied for funding later in the career (an example of the well-known Matthew effect), while those just below were more likely to go on to have stronger publication records (the early-career setback effect). In this study the Matthew effect was found to be robust across funders, and to generalize from those close to the funding threshold to the whole population. The early-career setback effect was not robust across funders and did not generalize to the whole population. The evidence reported is convincing.

Evidence from 14 research funding programmes confirms that early winners tend to keep winning (Matthew effect). But the idea that an early setback makes you stronger later doesnโ€™t replicate widely.
buff.ly/UEtcRd4

12.11.2025 16:15 ๐Ÿ‘ 24 ๐Ÿ” 15 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 7

Check out our newest demonstrating feasabilty of sub-mm whole brain EEG-fMRI at 7T.
Happy to have been part of this amazing collaboration and thank you so much to Cristina and Joรฃo for leading this project ๐Ÿ˜Š๐Ÿ‘.

07.11.2025 09:06 ๐Ÿ‘ 12 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Is the the neuroimaging community (broadly conceived) submitting to ๐—ก๐—ฒ๐˜‚๐—ฟ๐—ผ๐—ถ๐—บ๐—ฎ๐—ด๐—ฒ again?????

Not to be publication police but the shift had seemed major 1-2 years ago.
Looking at the editorial board it seems to have serious scientists once more.
Curious about thoughts of the community.

21.10.2025 16:16 ๐Ÿ‘ 24 ๐Ÿ” 9 ๐Ÿ’ฌ 7 ๐Ÿ“Œ 0
Video thumbnail

Monty Python understood p-hacking

23.10.2025 08:43 ๐Ÿ‘ 499 ๐Ÿ” 143 ๐Ÿ’ฌ 5 ๐Ÿ“Œ 10

Enrico Amico and I have a project with competitively awarded studentships available through the MIBTP doctoral landscape award:
Decoding Human Thalamocortical Interactions with Invasive Electrophysiology
warwick.ac.uk/fac/cross_fa...

Please circulate and get in touch if interested.

21.10.2025 15:55 ๐Ÿ‘ 1 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
The names of the speakers:
Melanie Boly
Ray Dolan
Davide Folloni
Laura Gwilliams
Charles Hillman
Hilleke Hulshoff Pol
Jean-Rรฉmi King
Daniel Margulies
Lucia Melloni

The names of the speakers: Melanie Boly Ray Dolan Davide Folloni Laura Gwilliams Charles Hillman Hilleke Hulshoff Pol Jean-Rรฉmi King Daniel Margulies Lucia Melloni

Get ready for the biggest #ABIM yet! ๐Ÿฅณ We're celebrating our 20th anniversary with a special edition you won't want to miss.
๐Ÿ—“๏ธ Registration & abstract submission: www.unige.ch/ABIM/partici...
๐Ÿ’ฐEarly bird fee ends November 9th!
#ABIM2026 #neuroimaging

14.10.2025 13:53 ๐Ÿ‘ 13 ๐Ÿ” 9 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1
Post image

Preprint: www.biorxiv.org/content/10.1...

Code: github.com/neurotuning/...

10.10.2025 07:33 ๐Ÿ‘ 21 ๐Ÿ” 7 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 1
Preview
A national recognition; but science and open source are bitter victories I have recently been awarded Franceโ€™s national order of merit, for my career, in science, in open source, and around AI. The speech that I gave carries messages important to me (French below;...

A speech about what drives me, how science and open source are bitter victories, unable to make improve the world if society does not embrace them for the better:
gael-varoquaux.info/personnal/a-...

10.10.2025 11:37 ๐Ÿ‘ 116 ๐Ÿ” 37 ๐Ÿ’ฌ 5 ๐Ÿ“Œ 5

When @laurapritschet.bsky.social & Pavel Shapturenka set out to build the 28&Me + 28&He datasets, I don't think any of us could've predicted the spectacularly creative ways the datasets would be used years later. That's the power of open science. ๐Ÿ‘‡๐Ÿผ

03.10.2025 20:00 ๐Ÿ‘ 22 ๐Ÿ” 8 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Preview
The Cambridge Handbook of Human Affective Neuroscience Cambridge Core - Cognition - The Cambridge Handbook of Human Affective Neuroscience

#emotion
Armony, J., & Vuilleumier, P. (2025). The Cambridge handbook of human affective neuroscience (2nd ed.). Cambridge University Press. doi.org/10.1017/9781...

02.10.2025 19:26 ๐Ÿ‘ 1 ๐Ÿ” 2 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Post image

New layer-fMRI preprint using simultaneous layer-fMRI with EEG at 7T. Establishing an acquisition and analysis setup to capture layer-fMRI correlates of spontaneous alpha power variations.
By Marsh et al.
doi.org/10.1101/2025...

02.10.2025 13:08 ๐Ÿ‘ 17 ๐Ÿ” 5 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1

Normative framework of bigger tech

(aka, me trolling the tech audience)

01.10.2025 16:41 ๐Ÿ‘ 21 ๐Ÿ” 6 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 2
Post image

Ever wondered if your interesting brain-behavior correlation was over- or under-estimated due to head motion, but were afraid to ask? Weโ€™ve created a motion impact score for detecting spurious brain-behavior associations, now available in Nature Communications!
doi.org/10.1038/s414...

30.09.2025 19:39 ๐Ÿ‘ 58 ๐Ÿ” 23 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 2
Preview
Disentangling metabolic and neurovascular timescales supporting cognitive processes | PNAS The balance between neural excitation and inhibition (EIB), governed by glutamatergic and GABAergic neurotransmission, is an essential mechanism su...

Excited to share such a career milestone ๐ŸŒŸ Our new @pnas.org paper shows how Eโ€“I balance drives dynamic brain adaptation.

Thanks to @jorgejovicich.bsky.social, @dimitrivdv.bsky.social, @asiaferrari.bsky.social, @bcassone.bsky.social & amazing co-authors ๐Ÿ™
๐Ÿ”— www.pnas.org/doi/10.1073/...

24.09.2025 07:41 ๐Ÿ‘ 8 ๐Ÿ” 6 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Post image
19.09.2025 17:04 ๐Ÿ‘ 244 ๐Ÿ” 53 ๐Ÿ’ฌ 7 ๐Ÿ“Œ 7

good idea! any open datasets you could recommend from your group as a starting point?

18.09.2025 17:37 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

This was my first paper with the new @elife.bsky.social model. Have to say, while I don't agree with all the reviewers' comments the new process is awesome. We can directly reply to their concerns and it'll be obvious what changed between revisions when we upload the revised version :) 4/4

16.09.2025 06:45 ๐Ÿ‘ 7 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Assistant-e (A2) (6548)

We are hiring !

๐Ÿ‘ฉ๐Ÿผโ€๐ŸŽ“๐Ÿ‘จโ€๐ŸŽ“๐Ÿง‘๐Ÿผโ€๐ŸŽ“๐Ÿ‘จ๐Ÿฟโ€๐ŸŽ“๐Ÿ‘ฉ๐Ÿฟโ€๐ŸŽ“๐Ÿ‘ฉโ€๐ŸŽ“

I am looking for a motivated person interested in a PhD in basic neuroscience, for a project at the edge between epilepsy and sleep.

If you are interested, check the job announcement:
jobs.unige.ch/www/wd_porta...

15.09.2025 12:41 ๐Ÿ‘ 6 ๐Ÿ” 5 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 1

Maybe. But what would it mean anyways ๐Ÿ˜‰:
bsky.app/profile/hyru...
2025.ccneuro.org/poster/?id=n...

09.09.2025 07:09 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Launched in 2023, Imaging Neuroscience is now firmly established, with full indexing (PubMed, etc.) and 700 papers to date.

We're very happy to announce that we are able to reduce the APC to $1400.

Huge thanks to all authors, reviewers, editorial team+board, and MIT Press.

05.09.2025 02:59 ๐Ÿ‘ 233 ๐Ÿ” 80 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 6
Preview
The potential of laminar functional MRI in refining the understanding of epilepsy in humans Aitken et al. highlight laminar fMRI as a tool to connect the neural effects of anti-seizure medications with the microcircuits that generate seizures in e

Our review discussing the potential use of laminar fMRI for probing the role of cortical layers in epileptic seizure propagation and spread as well as it possible future clinical applications out in Brain (well as accepted manuscript!)

academic.oup.com/brain/advanc...

03.09.2025 19:24 ๐Ÿ‘ 10 ๐Ÿ” 5 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Happy to see this out: our new preprint shows that laminar GE-BOLD fMRI decoding isnโ€™t immune to vascular draining biases. Simulations reveal false positives due to multivariate signal spread across layers, but oversampling + deconvolution can (sometimes) improve specificity.

30.08.2025 14:28 ๐Ÿ‘ 19 ๐Ÿ” 8 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 1
Post image

New paper๐Ÿฅณ

๐Ÿง  In TLE, brain changes go beyond the temporal lobe & beyond normal aging.

Our ENIGMA study (769 patients, 18 sites) found widespread gray & white matter decline, especially after 55. By Judy Chen and a terrific intl' team

Time for earlier diagnosis & deeper research
bit.ly/3HRYeQt

24.08.2025 18:05 ๐Ÿ‘ 29 ๐Ÿ” 11 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0