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Ekta Mohanty

@ektamohanty

PhD Student at Blumenstiel’s lab, University of Kansas | Genome conflict and evolution | TEs | piRNAs | Drosophila🪰

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Latest posts by Ekta Mohanty @ektamohanty

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What are scientists saying about our new Genotyping Analysis service? 🤔

Try Genotyping Analysis Beta and get full allelic composition for just $30 with data insights included.

Send samples today. Get insights tomorrow.
👉 plasmidsaurus.com/genotyping

26.02.2026 17:15 👍 2 🔁 1 💬 0 📌 0
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If you're having a rough day, remember that in 1991 Tim Berners-Lee's paper for the World Wide Web was rejected and he was relegated to the poster session.

17.09.2024 13:33 👍 2108 🔁 735 💬 38 📌 37

Flamenco plasticity tunes somatic piRNAs, rewiring host isoforms and opening a route to heritable transposon spread https://www.biorxiv.org/content/10.1101/2025.10.13.681963v1

14.10.2025 17:34 👍 5 🔁 5 💬 0 📌 0
Graphical abstract: The Drosophila OSC Genome as a resource for transposon and piRNA biology. The figure illustrates the workflow and key findings. Left: De novo genome assembly using Oxford Nanopore Technologies (ONT) long reads and Hi-C data generates a phased assembly distinguishing unique (blue) and repetitive (orange) sequences. Dot plot comparison between OSC-r1.01 and dm6 reference genomes shows overall synteny with extensive structural variation. Middle: A freely accessible UCSC genome browser session displays multi-omics data tracks including gene models, transposon insertions, chromatin accessibility, transcription, small RNAs, and histone modifications. Right: New insights into flamenco piRNA cluster biology reveal >730 kb transcribed from a single promoter without major splicing. Tethering assays demonstrate long-range silencing effects across the locus, and genome browser tracks show coordinated regulation of piRNA production, transcription, and chromatin state. This resource enables comprehensive studies of transposon regulation and piRNA pathway function in a widely-used Drosophila cell line.

Graphical abstract: The Drosophila OSC Genome as a resource for transposon and piRNA biology. The figure illustrates the workflow and key findings. Left: De novo genome assembly using Oxford Nanopore Technologies (ONT) long reads and Hi-C data generates a phased assembly distinguishing unique (blue) and repetitive (orange) sequences. Dot plot comparison between OSC-r1.01 and dm6 reference genomes shows overall synteny with extensive structural variation. Middle: A freely accessible UCSC genome browser session displays multi-omics data tracks including gene models, transposon insertions, chromatin accessibility, transcription, small RNAs, and histone modifications. Right: New insights into flamenco piRNA cluster biology reveal >730 kb transcribed from a single promoter without major splicing. Tethering assays demonstrate long-range silencing effects across the locus, and genome browser tracks show coordinated regulation of piRNA production, transcription, and chromatin state. This resource enables comprehensive studies of transposon regulation and piRNA pathway function in a widely-used Drosophila cell line.

When transposons jump, genomes diverge - even in cultured cells.
I am happy to share our new preprint: a chromosome-scale genome assembly for Drosophila OSC cells, one of the key model systems in the piRNA field, especially for nuclear piRNA biology. 🧬🧵 (1/12)

14.10.2025 20:34 👍 66 🔁 24 💬 3 📌 4
An illustration of a person standing at the top of stairs that end, with text: To increase diversity in STEM, a foot in the door isn’t enough. We need better support.

An illustration of a person standing at the top of stairs that end, with text: To increase diversity in STEM, a foot in the door isn’t enough. We need better support.

"Talent and grit matter, but so do structure, transparency, and care." #ScienceWorkingLife https://scim.ag/4nCiPYg

23.09.2025 17:03 👍 56 🔁 16 💬 0 📌 0
University of Minnesota Genomics Center Model Organism Sequencing Service Flyer. $25 for a 30x Drosophila genome.

University of Minnesota Genomics Center Model Organism Sequencing Service Flyer. $25 for a 30x Drosophila genome.

Hey fellow Drosophila researchers - if you haven't heard, the UMGC is offering ultra low-cost genome sequencing! See here to learn more: z.umn.edu/UMGC-MOSS #Dros25

22.03.2025 23:39 👍 83 🔁 52 💬 8 📌 8
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Just wrapped up an incredible few days at #Dros25. Full of brilliant science, amazing discussions, and the buzzing energy of fly people geeking out together.

24.03.2025 04:47 👍 5 🔁 1 💬 0 📌 0
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White House pauses all federal grants, sparking confusion The Trump administration has put a hold on all federal financial grants and loans, affecting tens of billions of dollars in payments.

I think some people hear “grants” and think that without them, scientists and government workers just have less stuff to play with at work. But grants fund salaries for students, academics, researchers, and people who work in all areas of public service.

“Pausing” grants means people don’t eat.

28.01.2025 03:03 👍 43464 🔁 14406 💬 1582 📌 946
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Nucleoporins shape germ granule architecture and balance small RNA silencing pathways Animals have evolved distinct small RNA pathways, including piRNA and siRNA, to silence invasive and selfish nucleic acids. piRNA pathway factors are concentrated in perinuclear germ granules that fre...

Nucleoporins shape germ granule architecture and balance small RNA silencing pathways

www.biorxiv.org/content/10.1...

28.01.2025 14:54 👍 11 🔁 5 💬 0 📌 0

Almost 2000 Drosophila labs listed, searchable and sortable on this very useful page from @flybase.bsky.social
wiki.flybase.org/wiki/FlyBase...

02.12.2023 22:40 👍 13 🔁 11 💬 1 📌 0