Klaus Schlaeppi's Avatar

Klaus Schlaeppi

@kschlaeppi

Interested in plant root microbiome interactions. University of Basel https://duw.unibas.ch/en/pmi/

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18.11.2024
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Latest posts by Klaus Schlaeppi @kschlaeppi

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Hoy celebramos el Día Internacional de la Mujer y la Niña en la Ciencia visibilizando algo cotidiano en nuestro grupo: hacer ciencia en un equipo lleno de referentes femeninos.

Es clave crear espacios donde las cientificas puedan liderar, investigar e inspirar.

#diamujeryniñaenciencia

11.02.2026 15:35 👍 4 🔁 2 💬 0 📌 0

👍

07.02.2026 15:38 👍 0 🔁 0 💬 0 📌 0

III) IG catabolic product: do you refer to the I3Acetate or the 3Acetaldehyde or ...? The Acetaldehyde is difficult to square, we think it is of bacterial origin (bacterial Auxin precursor); we see this only induced in exudates and it is already present in absence of plants (only the SynCom).

04.02.2026 08:51 👍 0 🔁 0 💬 1 📌 0

I) clay vs. glass absorption: Yes, our worry is that surface properties of soil particles will strongly affect recovery of metabolite profiles.
II) Nitriles or ITS: not specifically recovered by our approach (maybe an annotation issue)

04.02.2026 08:45 👍 0 🔁 0 💬 0 📌 0
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30.01.2026 16:53 👍 3 🔁 0 💬 1 📌 0

Preprint: Here we report a glass bead-based system suitable for the *simultaneous monitoring* of Arabidopsis root exudate and root microbiome dynamics. Teaser: some link between glucosinolates ~ SynCom composition. Happy reading. Credits to Charlotte Joller et al.! www.biorxiv.org/content/10.6...

30.01.2026 16:43 👍 25 🔁 15 💬 1 📌 0

Preprint: Here we report a glass bead-based system suitable for the *simultaneous monitoring* of Arabidopsis root exudate and root microbiome dynamics. Teaser: some link between glucosinolates ~ SynCom composition. Happy reading. Credits to Charlotte Joller et al.! www.biorxiv.org/content/10.6...

30.01.2026 16:43 👍 25 🔁 15 💬 1 📌 0
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Soil iron drives beneficial maize microbiome feedbacks in rotations with wheat Background: Plants change their surrounding soil microbiome by root exudates and such conditioned microbiomes impact the performance of the present as well as the next plant generation as for example ...

Preprint: We identified soil iron levels as critical factor explaining the variation in soil microbiome feedbacks on plant growth. The soil microbiomes tend to provide more beneficial feedbacks at low levels of soil iron. Happy reading.
Credits to Jan Waelchli et al.!
www.biorxiv.org/content/10.6...

09.01.2026 07:08 👍 15 🔁 5 💬 0 📌 1

A new @newphyt.bsky.social Profile, this time on Roberto Solano:

nph.onlinelibrary.wiley.com/doi/10.1111/...

Interesting as always 👍

#PlantScience #PlantImmunity #Marchantia

25.11.2025 10:35 👍 12 🔁 5 💬 0 📌 0
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Evolutionary trade-off between stomatal defense and gas exchange in Brassicaceae Kang et al. show that coronatine hijacks the ABA hydroxylase CYP707A1 in A. thaliana to override stomatal defense. While CYP707A1 also enables rapid light-induced stomatal opening, C. rubella and E. s...

Our ten years of work is finally out in Current Biology! We reveal a new mode of action of the bacterial phytotoxin coronatine produced by Pseudomonas syringae. www.cell.com/current-biol...

18.11.2025 03:41 👍 26 🔁 11 💬 1 📌 1
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Clarivate highlights every year individual researchers as #HighlyCited2025. However and to make this clear: such a recognition is a team’s effort. ALL credits and glitter [✨] go to my GREAT TEAM, colleagues and collaborations who contributed with work, writing and spreading our studies!

13.11.2025 19:45 👍 6 🔁 1 💬 0 📌 0
13th Utrecht PhD Summer School​ 
Environmental Signaling in Plants
Aug 24-26 2026
Speakers: Laura Ragni, Roeland Berendsen, Mariana Silva Artur, Matthew Paul, Ari Sadanandom, Beatrice Giuntoli, Bruno Guillotin, Priya Ramakrishna, Caroline Gutjahr, Niko Geldner, Laura Bacete and Marcel Beukeboom.

13th Utrecht PhD Summer School​ Environmental Signaling in Plants Aug 24-26 2026 Speakers: Laura Ragni, Roeland Berendsen, Mariana Silva Artur, Matthew Paul, Ari Sadanandom, Beatrice Giuntoli, Bruno Guillotin, Priya Ramakrishna, Caroline Gutjahr, Niko Geldner, Laura Bacete and Marcel Beukeboom.

We are beyond excited to reveal the full line-up for our Environmental Signaling in Plants summer school 2026!

Registration is now open here eps.sites.uu.nl - we look forward to seeing you in Utrecht on 24th-26th August!

11.11.2025 15:58 👍 24 🔁 22 💬 2 📌 5
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Exciting days at the #PMS2025! Our team joined the global plant microbiome community to present new insights into microbe-induced resistance and multitrophic interactions—one talk, two posters, and plenty of great discussions. Science grows better together! 🌿🤝 @microsos.bsky.social

10.11.2025 15:51 👍 16 🔁 2 💬 1 📌 0
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EPSO 6th Workshop on Plants and Microbiomes, Malaga 3.11.2025 – success and outcome - EPSO The EPSO Working Group on Plants and Microbiomes held its sixth workshop in Antequera / Malaga on 3.11.2025 which brought together over 100 enthusiastic researchers just ahead of the 6th Plant Microbi...

EPSO 6th Workshop on Plants and Microbiomes, Malaga 3.11.2025 – success and outcome. bit.ly/43jUtLg
#PlantScience #SDG #HorizonEU #biodiversity #EUFarm2Fork

07.11.2025 10:19 👍 12 🔁 2 💬 0 📌 1
A vinyl box with six colored vinyl LPs sticking out of its right side. The Title "Guns in Rosettes" is on top, with the subtitle "The Arabidopsis chemical weapons arsenal" just below. Then there is an Arabidopsis plant with machine guns sticking out. Below is the statement "6-LP LIMITED EDITION COLORED VINYL BOX SET"

A vinyl box with six colored vinyl LPs sticking out of its right side. The Title "Guns in Rosettes" is on top, with the subtitle "The Arabidopsis chemical weapons arsenal" just below. Then there is an Arabidopsis plant with machine guns sticking out. Below is the statement "6-LP LIMITED EDITION COLORED VINYL BOX SET"

The back cover of the vinyl box set showing the tracklist:
1. Methionine-derived compounds
    Aliphatic GSLs
2. Tryptophan-derived compounds (trptonites)
    Indolic GSLs
    Camalexin
    Hycanite (4-OH-ICN)
3. Phenylalanine-derived compounds (phenylpropanoids)
    Benzenic GSLs
    Coumarins
    Hydroxycinnamates
    Flavonoids
4. Terpenoids
    (E)-β-caryophyllene
    α- and β-pinene
    Thalianin, arabidin, and DMNT

And the statement "Recorded live in front of an audience in 2025"

The back cover of the vinyl box set showing the tracklist: 1. Methionine-derived compounds Aliphatic GSLs 2. Tryptophan-derived compounds (trptonites) Indolic GSLs Camalexin Hycanite (4-OH-ICN) 3. Phenylalanine-derived compounds (phenylpropanoids) Benzenic GSLs Coumarins Hydroxycinnamates Flavonoids 4. Terpenoids (E)-β-caryophyllene α- and β-pinene Thalianin, arabidin, and DMNT And the statement "Recorded live in front of an audience in 2025"

Our article "Guns in Rosettes: The Arabidopsis chemical weapons arsenal" is finally published @plantphys.bsky.social!
You can download the #OpenAccess PDF here:

doi.org/10.1093/plph...

But real connoisseurs of #AntimicrobialCompounds will want to get the vinyl boxset: #PlantScience #PlantImmunity

09.10.2025 07:58 👍 65 🔁 28 💬 4 📌 4
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🌱📢46th EPSO seminar for European Plant Scientists: 16/10/2025 at 15.00 CET discussing The impact of ERC funding for Plant Sciences. EPSO members register, suggest themes, senior and junior speakers for spring seminars 👉http://bit.ly/3WpPYuC. #PlantScience #SDG #HorizonEU

06.10.2025 10:44 👍 18 🔁 8 💬 0 📌 1
https://academic.oup.com/pcp/article-abstract/doi/10.1093/pcp/pcaf126/8277635

We’re delighted to share that our paper has been just accepted in PCP!

We analyzed fungus–fungus competition that suppresses pathogenic colonization in Arabidopsis roots.Special thanks to Duke, Hiroyuki, Yuki, Nanami, and everyone who contributed!
t.co/obQyD1rzI1

13.10.2025 00:58 👍 8 🔁 6 💬 0 📌 1
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Localized glutamine leakage drives the spatial structure of root microbial colonization Plant roots release exudates to encourage microbiome assembly, which influences the function and stress resilience of plants. How specific exudates drive spatial colonization patterns remains largely ...

A long road to the Cover of Science!
www.science.org/doi/10.1126/...

03.10.2025 12:45 👍 137 🔁 50 💬 9 📌 4
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Charlotte Joller successfully defended her PhD thesis. Coolness, commitment and talent > very good PhD. Congratulations Charlotte! #proudPI

19.09.2025 20:57 👍 15 🔁 1 💬 2 📌 0
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Katja Stengele successfully defended her PhD thesis. Rational thinking, logic, commitment and talent >>> very good PhD. Congratulations Katja! #proudPI

26.09.2025 19:37 👍 7 🔁 1 💬 0 📌 0
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✨🌙 ¡La Noche Europea de los Investigadores ya ha comenzado!

Desde la EEZ-CSIC compartimos nuestra ciencia con tres talleres: plantas y bichos, microbiomas y nutrición animal y el mundo oculto visto con microscopía. ¡Visítanos en el stand de la @eezcsic.bsky.social!
🔬🌱🐄

26.09.2025 15:56 👍 5 🔁 2 💬 0 📌 0
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Katja Stengele successfully defended her PhD thesis. Rational thinking, logic, commitment and talent >>> very good PhD. Congratulations Katja! #proudPI

26.09.2025 19:37 👍 7 🔁 1 💬 0 📌 0
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Charlotte Joller successfully defended her PhD thesis. Coolness, commitment and talent > very good PhD. Congratulations Charlotte! #proudPI

19.09.2025 20:57 👍 15 🔁 1 💬 2 📌 0
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Six years ago, I started at the MPIPZ with a head full of ideas. What a journey. I’m thrilled to share that, from Jan 2026, I will be moving to Zurich as a chaired associate professor at the University of Zurich.
A new chapter, and plenty of roots still to grow. Can’t wait for the adventure ahead!

01.09.2025 07:24 👍 226 🔁 23 💬 39 📌 2

Congratulations Tonni🍻 Gonna miss you

01.09.2025 08:27 👍 1 🔁 1 💬 0 📌 0
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Benzoxazinoid-mediated microbiome feedbacks enhance Arabidopsis growth and defense Plants modulate their surrounding microbiome via root exudates and this conditioned soil microbiome feeds back on the performance of the next generation of plants. How plants can perceive this altered...

updated preprint: Intriguingly, Arabidopsis responded with both, improved growth and enhanced defence to a maize-conditioned soil microbiome, and this dual microbiome feedbacks were mediated by priming of the defences. Credits to Katja Stengele et al.!
www.biorxiv.org/content/10.1...

29.08.2025 18:45 👍 11 🔁 6 💬 0 📌 0
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Synthetic communities of maize root bacteria interact and redirect benzoxazinoid metabolization | mSphere We investigated how maize root bacteria—alone or in community—tolerate and metabolize antimicrobial compounds of their host plant. We found that the capacity to metabolize such a compound impacts bact...

SynCom of maize root bacteria: in team work, they detox differently. Interacting they redirect the metabolisation to an alternative degradation product.

Credits: @lisathoenen.bsky.social, Dr. Christine Pestalozzi & teams @unibas.ch and @unibe.ch.

journals.asm.org/doi/10.1128/...

25.08.2025 13:55 👍 14 🔁 6 💬 0 📌 2
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How Plants communicate with the Soil Microbiome Bacteria and fungi in the soil have a major influence on plant growth. Plant researcher Klaus Schläppi is working to understand the biological mechanisms behind this interaction − knowledge that could...

www.unibas.ch/en/Research/... [some self-promo 🙈]

14.08.2025 18:38 👍 8 🔁 0 💬 0 📌 0
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A TNL receptor mediates microbiome feedbacks in Arabidopsis Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...

📜 A TNL receptor mediates microbiome feedbacks in Arabidopsis

🧑‍🔬 @henryjvr.bsky.social, @schandry.bsky.social, Claude Becker, Hiroaki Adachi, @kschlaeppi.bsky.social, et al.

📔 @biorxiv-plants.bsky.social

🔗 www.biorxiv.org/content/10.1...

#️⃣ #PlantScience #PlantImmunity #PlantMicrobiome

30.06.2025 18:37 👍 12 🔁 3 💬 0 📌 0
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A TNL receptor mediates microbiome feedbacks in Arabidopsis Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...

Updated preprint: MMF1 is "a microbiota receptor” through which Arabidopsis plants perceive their soil microbiome. Perception optimises root microbiome composition, immune status and ultimately leads to better growth. www.biorxiv.org/content/10.1...

30.06.2025 06:27 👍 31 🔁 9 💬 0 📌 0