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Angelos Amyntas

@amyntas

amynang.github.io/ ecologist, postdocing in Anne McLeod's Computational Ecology group @igb-berlin.de Stechlin #FoodWebs, #CommunityEcology keeping an ear on the ground for anything #Bayes, #OpenScience, #MetaScience Neustrelitz, Germany

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14.09.2024
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Latest posts by Angelos Amyntas @amyntas

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We are hiring: PhD position in Ecological Data Science We are looking for a PhD student to join the AG Hartig (Theoretical Ecology) in the field of ecological data science / deep learning. 

#PhDPosition in Ecological #DataScience in our group. For details, see www.uni-regensburg.de/universitaet... #MachineLearning #AI #DeepLearning #Statistics #Ecology #AcademicJobs

03.03.2026 19:53 πŸ‘ 22 πŸ” 20 πŸ’¬ 1 πŸ“Œ 0

Another robo-grouse drop. If you didn't see the thread yesterday (quoted below), I am looking for unusual examples of hidden Markov models to use as examples in a new lecture I am writing

12.03.2026 10:10 πŸ‘ 34 πŸ” 7 πŸ’¬ 1 πŸ“Œ 1
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Curious about the origin of development during the transition to multicellularity?

A very belated preprint alert: bit.ly/4rr2mHU
Reproduction emerges from ecological interactions at the onset of multicellularity.

A short 🧡 with lots of videos...

10.03.2026 19:56 πŸ‘ 91 πŸ” 33 πŸ’¬ 2 πŸ“Œ 6
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The usefulness of useless knowledge Politicians aren’t the best judges of the merits of scientific research

Ok. But any discussion of β€˜useless’ knowledge should also appreciate scientists’ incentives to claim uselessness. The history of performative irrelevance (e.g. Faraday claiming he could see no uses for the electron; Polanyi saying the same about Einstein while the bomb was being built) is rich.

11.03.2026 08:01 πŸ‘ 29 πŸ” 11 πŸ’¬ 3 πŸ“Œ 1
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GitHub - benjamin-rosenbaum/BayesFR: Fitting functional responses in 1 and 2-prey systems Fitting functional responses in 1 and 2-prey systems - benjamin-rosenbaum/BayesFR

I have written my first R-package for feeding experiments! BayesFR allows fitting functional responses by providing dynamical prediction models for use in #brms. Includes models for classical type 2 and type 3 responses, and also prey mortality or predator interference (more to come) #Rstats (1/3)

11.03.2026 08:06 πŸ‘ 28 πŸ” 12 πŸ’¬ 2 πŸ“Œ 0
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This is hilarious.

Also, completely enraging.

11.03.2026 01:56 πŸ‘ 9513 πŸ” 4354 πŸ’¬ 139 πŸ“Œ 216
Job Openings Explore exciting career opportunities at iDiv. Join a modern, international, and innovative research centre in the heart of Germany.

iDiv and @uni-jena.de are recruiting a Postdoctoral Researcher (f/m/d) in Trait-Based Community Ecology and Modelling.

Highlights:
πŸ”ΊFull-time (100%, 40 h/week) with the option to reduce to 80%
πŸ”ΊFixed-term for 2 years
πŸ”ΊSalary up to E13 TV‑L

πŸ“† Apply by: 29 March 2026

www.idiv.de/career/job-o...

04.03.2026 08:29 πŸ‘ 19 πŸ” 27 πŸ’¬ 0 πŸ“Œ 2

Hey fellow scientists, I'm just letting you know that if you're promoting something with some junky AI image, I'm not gonna click. You've got a workshop, a conference, a new paper?

Just not gonna bother. You want a bespoke image? Hire an illustrator.

09.03.2026 23:45 πŸ‘ 825 πŸ” 189 πŸ’¬ 28 πŸ“Œ 32
Unil center for theory in ecology and evolution (UCTEE) - FBM Unil Page Unil Center for Theory in Ecology and Evolution of site Faculty of Biology and Medicine hosted by the University of Lausanne

With @saramitri.bsky.social, @sonjalehtinen.bsky.social and L. Lehmann we’ve launched the UNIL Center for Theory in Ecology and Evolution @unil.bsky.socialπŸ‡¨πŸ‡­

To kick things off, we’re offering short visiting fellowships for theorists in ecology & evolution. Apply & pls RP πŸ˜€

tinyurl.com/2wem36zz

09.03.2026 15:59 πŸ‘ 88 πŸ” 73 πŸ’¬ 0 πŸ“Œ 5
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We are happy to announce 36 great thematic sessions for our #NSO2026 #GfOe2026 joint NSO-GfΓ– conference – bringing together diverse perspectives across the field of ecology. We look forward to be inspired!

Explore the full line-up: vist.ly/4txjq

@gfoesoc.bsky.social

06.03.2026 08:17 πŸ‘ 11 πŸ” 8 πŸ’¬ 0 πŸ“Œ 1

Does anyone have better solutions for extracting the contents of vdat files on Linux? Perhaps that don't involve a slightly finicky wine prefix?

27.02.2026 10:56 πŸ‘ 1 πŸ” 1 πŸ’¬ 2 πŸ“Œ 0
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A New Wharton Study on AI Warns of a Growing Problem: Cognitive Surrender Casual users should pay special attention

This is a mental war that we have to win. It's not about being a luddite, it's about destroying or retaining the ability to think. It's about how insidious this becomes in a situation where generative AI is adopted and then subverted intentionally.

www.thealgorithmicbridge.com/p/a-new-whar...

24.02.2026 20:28 πŸ‘ 675 πŸ” 241 πŸ’¬ 12 πŸ“Œ 25
Overview of the different visualisations available for a GLLVM with latent variables.
The colored areas represent the different model parameters.

Overview of the different visualisations available for a GLLVM with latent variables. The colored areas represent the different model parameters.

"One Toolbox, Many Tools: A Practitioner’s Guide to Latent Variable Modelling for Community Ecology"
doi.org/10.32942/X2K...

06.02.2026 09:30 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Where there is no hope, it is incumbent on us to invent it.

Camus

06.02.2026 09:52 πŸ‘ 58 πŸ” 16 πŸ’¬ 2 πŸ“Œ 0

We are hiring🚨

We are looking for 2 postdocs and 1 reasearch assistant to work in the ERC project β€œTipping dynamics and resilience in adapting ecological systems” at @eawag.bsky.social
Find the description of each position and the link to apply in the thread ⬇️

04.02.2026 08:27 πŸ‘ 9 πŸ” 11 πŸ’¬ 3 πŸ“Œ 0
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What's new in the world of Generalized Additive Models YouTube video by Bottom of the Heap

🚨 GAMs have moved onβ€”so it’s time for an update.

On March 3, 2026 (17:00–19:00 CET) I’ll be livestreaming an updated introduction to Generalized Additive Models in R

πŸ“Ί YouTube livestream link: youtube.com/live/A9U8e1K...

#RStats #mgcv #GAMs #gratia #statistics πŸ§ͺ

03.02.2026 12:57 πŸ‘ 107 πŸ” 47 πŸ’¬ 4 πŸ“Œ 1

I am doing a short workshop in this symposium (quoted below) for folks in and around Leipzig. Here's the abstract. I really indulged myself with this one.

A Guerilla Approach to Scientific Workflow:

04.02.2026 12:05 πŸ‘ 70 πŸ” 14 πŸ’¬ 3 πŸ“Œ 2

This is a post about animal excrement and the English language.

bull$#!% = nonsense/lies
chicken$#!% = petty or cowardly
horse$#!% = nonsense/lies
dog$#!%= low quality
ape$#!% = wild
bat$#!%= crazy

Ordered above from oldest to newest: bull$#!% (1914), bat$#!% (1971).

02.02.2026 15:23 πŸ‘ 2865 πŸ” 876 πŸ’¬ 88 πŸ“Œ 123

Took me way too long to realize that its super easy to just merge pdfs in R rather than fussing with Adobe #rstats

library(pdftools)
pdf_combine(
input = c("file1.pdf", "file2.pdf"),
output = "merged.pdf"
)

30.01.2026 18:43 πŸ‘ 78 πŸ” 17 πŸ’¬ 5 πŸ“Œ 2
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Professorship W3 for Plant Ecology - Regensburg (Stadt), Bayern (DE) job with UniversitΓ€t Regensburg | 12851147 UNIVERSITΓ„T REGENSBURG Β  The Faculty of Biology and Pre-Clinical Medicine invites applications for a Β  Full Professorship W3 for Plant Ecology Β  Th...

Dear colleagues, we are searching for candidates to fill a Full W3 Professorship for Plant #Ecology at the University of Regensburg, Germany. For details, see www.nature.com/naturecareer... 🌐 🌎 #AcademicJobs

29.01.2026 15:00 πŸ‘ 16 πŸ” 23 πŸ’¬ 0 πŸ“Œ 0
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Functional motifs in food webs and networks | PNAS When studying a complex system, it is often useful to think of the system as a network of interacting units. One can then ask if some properties of...

New paper with @mhab.bsky.social @jdyeakel.bsky.social and @thilogross.bsky.social out now in @pnas.org! We show when and why you can know something about an entire network, just by knowing the behavior of it's building blocks: doi.org/10.1073/pnas...

29.01.2026 18:13 πŸ‘ 27 πŸ” 9 πŸ’¬ 0 πŸ“Œ 2

Everytime some asshole starts taking about how "EU regulation stifles innovation", this is the kind of stuff they are hoping to enable.

30.01.2026 13:51 πŸ‘ 22 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
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How I stopped believing in the biodiversity-ecosystem functioning consensus The E120 Biodiversity Experiment at Cedar Creek in Minnesota, from their website. It all began with the best of intentions. By the time the Millennium Ecosystem Assessment was published in 2005, th…

Does greater biodiversity always increase ecosystem functioning? I used to think so, but now I'm not so sure.

29.01.2026 16:22 πŸ‘ 27 πŸ” 9 πŸ’¬ 5 πŸ“Œ 1

My impression is that when we use environmental change as the motivation for BEF research, we are often unclear about how we propose that the three relate to each other. Is diversity a potential moderator of env. change effects on functioning (possible) or a mediator (less likely).

29.01.2026 18:27 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Post doctor (3 years) within mountain plant community and ecosystem processes across a globally distributed experiment

Great postdoc opportunity in Sweden!! With the one and only David Wardle πŸ§ͺ🌐
www.umu.se/en/work-with...

24.01.2026 16:25 πŸ‘ 54 πŸ” 47 πŸ’¬ 2 πŸ“Œ 0
A bird's-eye view of a former Auschwitz II-Birkenau camp showing a wide dirt pathway flanked by parallel rows of barbed-wire fences. Groups of visitors walk along the path, surrounded by the remnants of brick structures and barracks, now reduced to foundations. Green grass contrasts with the somber history of the site, as the path leads toward a guard tower in the distance.

A bird's-eye view of a former Auschwitz II-Birkenau camp showing a wide dirt pathway flanked by parallel rows of barbed-wire fences. Groups of visitors walk along the path, surrounded by the remnants of brick structures and barracks, now reduced to foundations. Green grass contrasts with the somber history of the site, as the path leads toward a guard tower in the distance.

Auschwitz was at the end of a process. We must remember that it did not start from gas chambers.

This hatred gradually developed: from ideas, words, stereotypes & prejudice through legal exclusion, dehumanization & escalating violence... to systematic and industrial murder.

Auschwitz took time.

27.01.2026 11:00 πŸ‘ 12015 πŸ” 5899 πŸ’¬ 237 πŸ“Œ 345
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Less than a month to apply to join the BES editorial board as an Associate editor!🌳🌍 πŸ“–

If you're interested in contributing to any of the BES journals, check out the link below πŸ‘‡

buff.ly/6ymRGcB

27.01.2026 08:30 πŸ‘ 6 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0

We are currently looking for a postdoctoral researcher with expertise in community ecology to work in the Arthropods Core Project of the Biodiversity Exploratories @bexplo.bsky.social

Reposting is much appreciated for widest reach! Thanks.

More information here:
www.lss.ls.tum.de/fileadmin/w0...

26.01.2026 14:03 πŸ‘ 20 πŸ” 28 πŸ’¬ 0 πŸ“Œ 1
**Part 1: From Bayesian inference to Bayesian workflow**

1. Bayesian theory and Bayesian practice
2. Statistical modeling and workflow
3. Computational tools
4. Introduction to workflow: Modeling performance on a multiple choice exam

**Part 2: Statistical workflow**

5. Building statistical models
6. Using simulations to capture uncertainty
7. Prediction, generalization, and causal inference
8. Visualizing and checking fitted models
9. Comparing and improving models
10. Statistical inference and scientific inference

**Part 3: Computational workflow**

11. Fitting statistical models
12. Diagnosing and fixing problems with fitting
13. Approximate algorithms and approximate models
14. Simulation-based calibration checking
15. Statistical modeling as software development

**Part 1: From Bayesian inference to Bayesian workflow** 1. Bayesian theory and Bayesian practice 2. Statistical modeling and workflow 3. Computational tools 4. Introduction to workflow: Modeling performance on a multiple choice exam **Part 2: Statistical workflow** 5. Building statistical models 6. Using simulations to capture uncertainty 7. Prediction, generalization, and causal inference 8. Visualizing and checking fitted models 9. Comparing and improving models 10. Statistical inference and scientific inference **Part 3: Computational workflow** 11. Fitting statistical models 12. Diagnosing and fixing problems with fitting 13. Approximate algorithms and approximate models 14. Simulation-based calibration checking 15. Statistical modeling as software development

**4. Case studies**

16. Coding a series of models: Simulated data of movie ratings
17. Prior specification for regression models: Reanalysis of a sleep study
18. Predictive model checking and comparison: Clinical trial
19. Building up to a hierarchical model: Coronavirus testing
20. Using a fitted model for decision analysis: Mixture model for time series competition
21. Posterior predictive checking: Stochastic learning in dogs
22. Incremental development and testing: Black cat adoptions
23. Debugging a model: World Cup football
24. Leave-one-out cross validation model checking and comparison: Roaches
25. Model building and expansion: Golf putting
26. Model building with latent variables: Markov models for animal movement
27. Model building: Time-series decomposition for birthdays
28. Models for regression coefficients and variable selection: Student grades
29. Sampling problems with latent variables: No vehicles in the park
30. Challenge of multimodality: Differential equation for planetary motion
31. Simulation-based calibration checking in model development workflow

**Appendices**

A. Statistical and computational workflow for Bayesians and non-Bayesians
B. How to get the most out of Bayesian Data Analysis

**4. Case studies** 16. Coding a series of models: Simulated data of movie ratings 17. Prior specification for regression models: Reanalysis of a sleep study 18. Predictive model checking and comparison: Clinical trial 19. Building up to a hierarchical model: Coronavirus testing 20. Using a fitted model for decision analysis: Mixture model for time series competition 21. Posterior predictive checking: Stochastic learning in dogs 22. Incremental development and testing: Black cat adoptions 23. Debugging a model: World Cup football 24. Leave-one-out cross validation model checking and comparison: Roaches 25. Model building and expansion: Golf putting 26. Model building with latent variables: Markov models for animal movement 27. Model building: Time-series decomposition for birthdays 28. Models for regression coefficients and variable selection: Student grades 29. Sampling problems with latent variables: No vehicles in the park 30. Challenge of multimodality: Differential equation for planetary motion 31. Simulation-based calibration checking in model development workflow **Appendices** A. Statistical and computational workflow for Bayesians and non-Bayesians B. How to get the most out of Bayesian Data Analysis

Bayesian Workflow by
Andrew Gelman, Aki Vehtari, @rmcelreath.bsky.social with @danpsimpson.bsky.social, @charlesm993.bsky.social, @yulingy.bsky.social, Lauren Kennedy, Jonah Gabry, @paulbuerkner.com, @modrakm.bsky.social, @vianeylb.bsky.social

(in production, estimated copy-editing time 6 weeks)

26.01.2026 08:18 πŸ‘ 159 πŸ” 31 πŸ’¬ 3 πŸ“Œ 4