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Honglue

@honglue

NIH/NIGMS K99 fellow in the lab of @doudna-lab.bsky.social at UC Berkeley Previously JCC fellow in the Doudna lab and a PhD student in the Al-Hashimi lab

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30.11.2024
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Latest posts by Honglue @honglue

πŸš€ New preprint! @jacobsenucla.bsky.social x @doudna-lab.bsky.social collaboration: High-activity TnpB (Ymu1-WFR) + a multi-gRNA system in TRV enables heritable, tissue-culture-free multiplex editing in plants. Big potential for plant biotech 🧬🌾🌱
doi.org/10.64898/202...

27.01.2026 07:19 πŸ‘ 16 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
Preview
Stepwise DNA unwinding gates TnpB genome-editing activity TnpB is a compact RNA-guided endonuclease and evolutionary ancestor of CRISPR-Cas12 that offers a promising platform for genome engineering. However, the genome-editing activity of TnpBs remains limit...

New preprint πŸ‘‰Doudna x Bryant x Jacobsen x Savage collaboration!
Work led by @zehanzhou.bsky.social, I. Saffarian-Deemyad, @honglue.bsky.social, T. Weiss
We dissect how stepwise DNA unwinding gates TnpB genome editing, revealing how unwound DNA states enhance cleavage
www.biorxiv.org/content/10.6...

10.01.2026 17:16 πŸ‘ 25 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0

How do the ancestors of CRISPR-Cas unwind DNA and how can this lead to better genome editing? With our collaboration between @doudna-lab.bsky.social x @jacobsenucla.bsky.social x Zev Bryant's lab x @savagecatsonly.bsky.social we've uncovered the secrets behind TnpB's dynamics!

15.01.2026 06:55 πŸ‘ 15 πŸ” 9 πŸ’¬ 1 πŸ“Œ 0

The plasmids associated with this paper are available on addgene now! www.addgene.org/browse/artic...

18.09.2025 04:44 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 1

Welcome to the JCC family!

24.06.2025 16:06 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Our paper is finally out in Molecular Cell! πŸš€ We uncover why PAM-relaxed Cas9 variants like SpRY are inefficient β€” they get kinetically trapped during target engagement. Mechanistic insights like this are key to engineering smarter, faster genome editors. Huge thanks to the team! #CRISPR #editingπŸ”¬πŸ§¬

04.05.2025 23:46 πŸ‘ 8 πŸ” 3 πŸ’¬ 1 πŸ“Œ 1

Now online at Molecular Cell! What makes SpyCas9 such an efficient editor? Read more at: www.cell.com/molecular-ce...

Congrats @honglue.bsky.social, Noor Al-Sayyad, and @kevinwasko.bsky.social!

23.04.2025 21:49 πŸ‘ 29 πŸ” 9 πŸ’¬ 1 πŸ“Œ 2
Pictured: Kevin Wasko (left) and Honglue Shi in front of their gel imager, confirming that the SpRY Cas9 variant struggles to effectively open DNA

Pictured: Kevin Wasko (left) and Honglue Shi in front of their gel imager, confirming that the SpRY Cas9 variant struggles to effectively open DNA

β€œWhat we’ve done here is uncover the secret sauce that makes typical #Cas9 β€” the original Nobel molecule β€” so efficient and precise." – Co-first author @honglue.bsky.social of the @doudna-lab.bsky.social on his new paper out today in Molecular Cell

Read here: shorturl.at/p664D

23.04.2025 19:12 πŸ‘ 13 πŸ” 7 πŸ’¬ 0 πŸ“Œ 1

See details in this website
gess.hms.harvard.edu/event/meirui...

03.04.2025 22:15 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

πŸ§ͺπŸ§ͺπŸ§ͺ10 incredible findings about Cas10-relative, mCpol:
result number 10 will surprise you!πŸ§ͺπŸ§ͺπŸ§ͺ

@erinedoherty.bsky.social and I teamed up to understand the role and function of Cas10-relative, mCpol, and its role in antiphage immunity. For more, check out Erin's thread πŸ‘‡

31.03.2025 17:31 πŸ‘ 28 πŸ” 15 πŸ’¬ 2 πŸ“Œ 2

Catch @honglue.bsky.social at the Harvard Genome Engineering Seminar Series this Monday, April 7 at 1pm EST / 10am PST! If you’ve ever wondered why SpyCas9 is so efficient at genome editing, don’t miss his talkβ€”Zoom link: harvard.zoom.us/j/94394339529

03.04.2025 14:53 πŸ‘ 9 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
Post image

Giving a seminar for the Genome Engineering Seminar Series at Harvard this Monday, April 7 at 1pm EST / 10am PST! πŸŽ™οΈ I’ll be talking about our Cas9 workβ€”if you’ve ever wondered what the recipe is for high-efficiency CRISPR genome editing, come hang out!🧬πŸ’₯
πŸ“ Zoom link: harvard.zoom.us/j/94394339529

03.04.2025 06:57 πŸ‘ 8 πŸ” 8 πŸ’¬ 0 πŸ“Œ 2

Congratulations! Such an amazing work @erinedoherty.bsky.social

01.04.2025 15:42 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Preview
A miniature CRISPR-Cas10 enzyme confers immunity by an inverse signaling pathway Microbial and viral co-evolution has created immunity mechanisms involving oligonucleotide signaling that share mechanistic features with human anti-viral systems. In these pathways, including CBASS a...

Preprint alert! ✨ In this project that I co-led with @benadler.bsky.social, we show that a miniature CRISPR-Cas10-like enzyme, mCpol, uses a novel inverse signaling mechanism to prevent the spread of viruses that attempt immune evasion by depleting host cyclic nucleotides.

Check it out:

31.03.2025 16:27 πŸ‘ 63 πŸ” 30 πŸ’¬ 4 πŸ“Œ 3
Jennifer Doudna speaking at Stand Up for Science in Berkeley

Jennifer Doudna speaking at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

crowd at Stand Up for Science in Berkeley

Thanks to out @ucberkeleyofficial.bsky.social community for joining us at Stand Up For Science! @jenniferdoudna.bsky.social spoke about how NIH funding supported her PhD & NSF funding supported her development of #CRISPR genome editing. Federal funding is needed for life-saving science!

08.03.2025 00:03 πŸ‘ 90 πŸ” 27 πŸ’¬ 0 πŸ“Œ 2