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Daniel Hoces

@dhoces

Postdoc @Stanford. Engineering immune cells to fight cancer. Ph.D. @ETH_en | M.D. @CayetanoHeredia πŸ‡΅πŸ‡ͺ πŸ‡¨πŸ‡­

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07.11.2023
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Latest posts by Daniel Hoces @dhoces

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Distinct components of mRNA vaccines cooperate to instruct efficient germinal center responses This study dissects the individual contributions of the different components of mRNA vaccines to immune responses. Nucleoside-modified mRNA promotes the production of type I interferons that act on de...

I am excited to share that our work, in which we have dissected the signals driven by the nucleoside-modified mRNA and LNP components of mRNA vaccines that regulate germinal center (GC) responses, is now published in Cell! www.cell.com/cell/fulltex...

16.12.2025 17:39 πŸ‘ 46 πŸ” 19 πŸ’¬ 5 πŸ“Œ 4

Emma is an incredible mentor and scientist! Plus, Switzerland is a powerhouse of high-quality science. Don’t doubt to apply to this position.

10.11.2025 00:36 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

1 week left to apply for a postdoc position in beautiful Switzerland doing awesome mucosal immunology. See below for details! Please re-post to spread the word!

09.11.2025 22:41 πŸ‘ 6 πŸ” 5 πŸ’¬ 0 πŸ“Œ 2
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Botnar Institute of Immune Engineering - BIIE (ZΓΌrich): Doctoral studentships, Molecular Mucosal Immunology Group Botnar Institute of Immune Engineering - BIIE has a job opening for Doctoral studentships, Molecular Mucosal Immunology Group in ZΓΌrich (published: 29.10.2025). Apply now or check the other available...

We are hiring! 🧫 🧬 πŸš€

Three PhD studentships with start dates in 2026 available in the Molecular Mucosal Immunology lab at the Botnar Institute of Immune Engineering, Basel, Switzerland.

See here for details (Deadline: 7th November 2025):

join.com/companies/im...

29.10.2025 12:51 πŸ‘ 10 πŸ” 12 πŸ’¬ 0 πŸ“Œ 0
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Introducing SLAE, our new framework to represent all-atom protein structures with residue local chemical environment tokens!
SLAE reasons over atomic interactions to recover structures and residue pairwise energetics, yielding a generalizable, physics-informed latent space. (1/8)

09.10.2025 17:36 πŸ‘ 7 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Excitability as a Design Principle in the Immune System https://www.biorxiv.org/content/10.1101/2025.08.31.673412v1

03.09.2025 03:16 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

LCK deficiency in CD8 T cells leads to reduced proliferation and increased effector T-cell formation in mice https://www.biorxiv.org/content/10.1101/2025.08.28.672860v1

03.09.2025 04:16 πŸ‘ 0 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Did you ever wonder what insights hide in the multiplets that are usually discarded in flow cytometry? 🫧 Find out in the first publication of my PhD, now out in Nature Methods! www.nature.com/articles/s41... (1/4)

07.08.2025 20:48 πŸ‘ 36 πŸ” 17 πŸ’¬ 3 πŸ“Œ 0
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Our new review article led by Jordan Kramer:

Platforms for studying cell–cell recognition by immune cells

onlinelibrary.wiley.com/doi/10.1111/...

31.05.2025 08:54 πŸ‘ 19 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0

As promised, a 'skeet' -orial on our paper published last week !

14.04.2025 13:05 πŸ‘ 28 πŸ” 9 πŸ’¬ 1 πŸ“Œ 0
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Continuous expression of TOX safeguards exhausted CD8 T cell epigenetic fate TOX safeguards exhaustion biology in established Tex cells and restrains fate conversion to Teff cells.

Excited to share my graduate work from the @ejohnwherry.bsky.social lab on the molecular mechanisms locking in the differentiation fate of exhausted CD8 T cells (Tex), published earlier this month in @science.org immunology. Main findings below!
www.science.org/doi/10.1126/...

28.03.2025 20:36 πŸ‘ 52 πŸ” 7 πŸ’¬ 13 πŸ“Œ 1
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ICYMI by First release - now in print @science.org

Identification of APCs in the gut that promote Treg differentiation and how tolerance to food antigens is influenced by helminth infection.

buff.ly/3DjNQ1e

By @cicacanesso.bsky.social @danmucida.bsky.social @victora.bsky.social et al

14.03.2025 15:25 πŸ‘ 59 πŸ” 17 πŸ’¬ 2 πŸ“Œ 1

Our paper is finally out in @immunolcellbiol.bsky.social, think that transcription factor expression is all that? Well not if the genome is not prepared in a way to allow binding: here is a short 🧡1/

01.03.2025 02:34 πŸ‘ 18 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0

1/ Ever wonder how a clearly brilliant person – someone great a math and engineering and company building – can display shockingly unintelligent thinking when it comes to politics? Neuroscience has the answer!

17.02.2025 23:54 πŸ‘ 3 πŸ” 2 πŸ’¬ 2 πŸ“Œ 0

Two weeks left to apply for a postdoc position with the Slack group! Please spread the word!

10.02.2025 20:13 πŸ‘ 22 πŸ” 24 πŸ’¬ 1 πŸ“Œ 0

Could you please add me to the pack? Thank you very much!

26.01.2025 15:52 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Our new work!

The 3D affinities of the OT-I TCR to foreign and self-antigens predict their 2D affinities and reveal imperfect antigen discrimination

www.biorxiv.org/content/10.1...

16.01.2025 08:10 πŸ‘ 17 πŸ” 4 πŸ’¬ 1 πŸ“Œ 1

Two studies published in @nature.com today showing that Tpex-like cells develop independent from acute or chronic infection

#Tpex

www.nature.com/articles/s41...

09.01.2025 08:33 πŸ‘ 8 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0
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Our work led by Anna Huhn is now published!
The molecular reach of antibodies crucially underpins their viral neutralisation capacity
lnkd.in/epe8YZPm

Thank you to the reviewers for constructive feedback!

04.01.2025 16:28 πŸ‘ 8 πŸ” 4 πŸ’¬ 1 πŸ“Œ 1
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A timed epigenetic switch balances T and ILC lineage proportions in the thymus Highlighted Article: Delayed activation of the T-cell lineage commitment regulator Bcl11b in mouse thymic progenitors due to distal enhancer deletion reduces T-cell output and increases Zbtb16-driven ...

Happy New Year! Excited about our new study on a timed epigenetic switch controlling T cell and ILC lineage decisions in the thymus! In a nutshell: timing is everything.

The study was led by the fantastic @nickpease.bsky.social. A thread: (1/n)

doi.org/10.1242/dev....

03.01.2025 19:21 πŸ‘ 24 πŸ” 11 πŸ’¬ 1 πŸ“Œ 0
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Thrilled to share our @sciimmunology.bsky.social paper! We report that rodent PD-1 is weaker than human PD-1 (reduced ligand binding & signaling) & lacks a conserved vertebrate motif. Humanizing mouse PD-1 disrupts T cell anti-tumor responses, raising many questions. science.org/doi/10.1126/...

04.01.2025 00:34 πŸ‘ 38 πŸ” 16 πŸ’¬ 2 πŸ“Œ 1
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Prior antigen experience of CAR T cells determines functional attributes and amenability to transcription factor-mediated functional enhancement
www.nature.com/articles/s41...
@koledegolier.bsky.social
www.nature.com/articles/s41...

02.01.2025 20:12 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Simply Statistics: Biologists, stop putting UMAP plots in your papers UMAP is a powerful tool for exploratory data analysis, but without a clear understanding of how it works, it can easily lead to confusion and misinterpretation.

Biologist, stop putting UMAP plots in papers!

Blogpost here: simplystatistics.org/posts/2024-1...

23.12.2024 13:38 πŸ‘ 241 πŸ” 68 πŸ’¬ 20 πŸ“Œ 16
JCI - Immunological and molecular features of the tumor microenvironment of long-term survivors of ovarian cancer

'The TME of Long Term Survival cases was distinguished by coinfiltration of T cells, B cells & plasma cells, along with upregulation of the PD-1/PD-L1 pathway. Remarkably, these prognostic associations were almost entirely restricted to tumors with high-epithelial content & the C4/DIF mol. subtype'

22.12.2024 10:32 πŸ‘ 1 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
JCI - Delayed reinforcement of costimulation improves the efficacy of mRNA vaccines in mice

"(...) reinforcing 41BB costimulation on the day of vaccination did not result in a substantial improvement in vaccine responses. However, reinforcing 41BB costimulation on day 4 after vaccination, when 41BB expression levels were highest, resulted in a profound improvement in CD8+ T cell responses"

21.12.2024 12:28 πŸ‘ 9 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
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πŸ–οΈ Hi Mam! - A superantigen (MAM) goes to the head of the class (II) to find alternatives to TCRs for specific peptide:MHC binders doi.org/10.1038/s415...

21.12.2024 13:00 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

This is a clever way to use synthetic biology: taking a toxin that overactivate the immune system (superantigen), rationally modify its core components and transform it into a platform of immunotherapy agents.
Congratulations to @haotiandu.bsky.social and @possuhuanglab.bsky.social on the 2 papers!

17.12.2024 14:07 πŸ‘ 6 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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1/ In two back-to-back papers, we present our de novo TRACeR platform for targeting MHC-I and MHC-II antigens

TRACeR for MHC-I: go.nature.com/4gcLzn5
TRACeR for MHC-II: go.nature.com/4gj5OQk

17.12.2024 00:56 πŸ‘ 92 πŸ” 29 πŸ’¬ 2 πŸ“Œ 9
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Out this week @science.org by first release: Specific combinations of nutrients and metabolic enzymes determine T cell differentiation via loci-specific histone acetylations.

https://buff.ly/4gvqKTz

From Shixin Ma, Sue Kaech @tcellogic.bsky.social and colleagues

#Immunology #immunometabolism

13.12.2024 12:20 πŸ‘ 31 πŸ” 5 πŸ’¬ 1 πŸ“Œ 2

Check out our last pub. from @mfgrp.bsky.social al lab! We discovered that skin commensal microbes induce systemic and local B cell responses upon colonization and took advantage of this knowledge to create topical vaccines using engineered skin microbes. Please read the thread for details.

12.12.2024 00:33 πŸ‘ 26 πŸ” 7 πŸ’¬ 3 πŸ“Œ 0