Trending
Louie Lopez's Avatar

Louie Lopez

@pinoyplankton

Postdoctoral Fellow in University of Victoria Environmental DNA | Environmental monitoring | Community ecology https://linktr.ee/marklouiedlopez

243
Followers
130
Following
15
Posts
22.11.2024
Joined
Posts Following

Latest posts by Louie Lopez @pinoyplankton

Preview
From Environmental DNA into Actionable Biodiversity Data: Towards the Implementation of the Kunming-Montreal Global Biodiversity Framework Abstract. Biodiversity is declining at an alarming rate due to ongoing habitat destruction, climate change, pollution, the spread of invasive species, and

Excited to share our group’s new publication, where we explore how eDNA from water, soil, and air can push the boundaries of biodiversity monitoring. Our perspective is framed around the Kunming-Montreal Global Biodiversity Framework.

academic.oup.com/jhered/advan...

26.09.2025 15:02 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
MicroMates: Oceanic Odyssey A card game where science meets adventure – dive into the invisible world of microorganims!

A brilliant card game by @ericcapo12.bsky.social and team that brings the hidden world of microorganisms to life. Love how complex aquatic microbial community concepts are transformed into fun, engaging gameplay!

Back us & help spread the word πŸ‘‰ www.kickstarter.com/projects/170...

26.09.2025 15:00 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Post image

A new paper uses eDNA tools to confirm Chipewyan Prairie First Nations observations of geological changes in Cowper Lake, Alberta following a historical landslide in the 1940s πŸ”— tinyurl.com/hcek4jfc

21.08.2025 17:02 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
Conserved Sequence Identification Within Large Genomic Datasets Using β€˜Unikseq2’: Application in Environmental DNA Assay Development Identification of conserved genomic sequences and their utilisation as anchor points for clade detection and/or characterisation is a mainstay in ecological studies. For environmental DNA (eDNA) assa...

New publication alert! Unikseq 2.0 allows you to identify conserved regions within multiple sequence alignment, thus streamlining the process of primer-probe design for targeted and metabarcoding assay development

onlinelibrary.wiley.com/doi/10.1111/...

14.07.2025 01:45 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Detailed information on specificity and sensitivity was included to promote transparency and build confidence in eDNA-inferred data.

12.06.2025 15:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
Environmental DNA (eDNA) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America We present 125 eDNA quantitative real-time polymerase chain reaction (qPCR) assays against animal species of importance to North America. We show how these assays were designed and validated to compl...

Our team has just published 125 fully validated qPCR-based eDNA assays, targeting species of conservation relevance across North America.

Publication here: onlinelibrary.wiley.com/doi/10.1002/...

12.06.2025 15:40 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

The paper outlining the metadata framework has also been publishedβ€”a good read for all eDNA end-users.

06.06.2025 15:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
A Metadata Checklist and Data Formatting Guidelines to Make eDNA FAIR (Findable, Accessible, Interoperable, and Reusable) Environmental DNA (eDNA) has emerged as a transformative tool for biodiversity monitoring and species detection, yet inconsistent metadata practices hinder data interoperability and reuse. To address...

The next step for the eDNA field is to ensure that all data adhere to the FAIR (Findable, Accessible, Interoperable, and Reusable) principles. It’s encouraging to see initiatives like FAIReDNA (fair-edna.github.io/index.html), led by Miwa Takahashi at CSIRO, moving forward.

06.06.2025 15:29 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Reposting to invite contributions to our special issue with Environmental DNA journal (Wiley)! We're excited to showcase current eDNA research across Southeast Asia. Submit your work and help highlight the region’s growing impact in the field!

22.04.2025 21:33 πŸ‘ 5 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Post image Post image

Went out with Park Canada to do their regular European green crab monitoring. This time we’re trying to use eDNA passive sampler to see if it could improve detection in the field.

14.05.2025 21:34 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
Genome skimming supports two new crayfish species from the genus Pacifastacus Bott, 1950 (Decapoda: Astacidae) | Zootaxa

The result of nearly two decades of work, my coauthors and I have just described two new crayfish species from western North America: introducing the Misfortunate Crayfish and Okanagan Crayfish (doi.org/10.11646/zoo...). More to follow soon, but it should be open access - message if you need a PDF.

08.05.2025 13:55 πŸ‘ 52 πŸ” 15 πŸ’¬ 5 πŸ“Œ 6

Reposting to invite contributions to our special issue with Environmental DNA journal (Wiley)! We're excited to showcase current eDNA research across Southeast Asia. Submit your work and help highlight the region’s growing impact in the field!

22.04.2025 21:33 πŸ‘ 5 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Preview
SCIENTIFIC | Canadian Ecotoxicity Workshop Scientific program of the Canadian Ecotoxicity Workshop.

Glad to be co-chairing a session at CEW 2025 in Victoria, BC! We're calling for abstracts on eDNA/eRNA in ecosystem monitoring, ecotoxicology, and conservation. Join us in advancing molecular tools for environmental management!
#CEW2025 #eDNA #eRNA

www.ecotoxcan.ca/scientific-p...

15.04.2025 15:42 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
Meet The Fellows - Liber Ero Fellowship Program We are pleased to announce the 2025 Liber Ero Fellows! Β  Β Β Carrie Ann Adams Project:Β Protecting Canada’s migrating birds from habitat loss, artificial light attraction, and collisions using weather su...

We are pleased to announce the 2025 Liber Ero fellows!

liberero.ca/meet-the-fel...

02.04.2025 22:35 πŸ‘ 19 πŸ” 5 πŸ’¬ 1 πŸ“Œ 5
Preview
Ugly animals are victims of a β€˜preservation bias’. It’s time to save them (too) – Pledge Times

Our bias towards charismatic species leaves 'ugly' animals behind in conservation efforts.

But should looks determine which species we protect?🐑

🎧 @ipbes.net podcast ep feat. the world's ugliest animal "Mr. Blobby": https://www.podbean.com/ew/pb-j54ym-17ac1d1

28.03.2025 15:25 πŸ‘ 138 πŸ” 47 πŸ’¬ 1 πŸ“Œ 10
Preview
Environmental DNA Call for Papers - Understanding the Current Use of Environmental DNA in Southeast Asia: Promoting Accessibility through Networking and Capacity Building Environmental DNA is an open access eDNA journal that provides an international forum for basic & applied research on all areas of eDNA analysis.

If you are working on the use of environmental DNA in Southeast Asia or collaborating with researchers in the region, we invite you to submit a paper to the Environmental DNA journal's special issue. Deadline of submission is on July 31, 2025.

onlinelibrary.wiley.com/page/journal...

30.01.2025 23:08 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

A cutting-edge pipeline that:
βœ… Assembles complete, standardized mitogenomes from short-read libraries
βœ… Runs 2–7x faster and uses 3–4x less memory than existing tools
βœ… Enables robust eDNA assay design and phylogenetic analysis
βœ… Works seamlessly with museum specimens, even with degraded DNA

10.02.2025 01:50 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
mtGrasp: Streamlined reference‐grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources High-quality, accessible mitogenome sequences are crucial for comparative genomics, phylogenetic constructions and environmental DNA (eDNA) applications. With advancements in sequencing technologi...

I am happy to share our latest paper in Methods in Ecology and Evolution: "mtGrasp: Streamlined reference-grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources"

besjournals.onlinelibrary.wiley.com/doi/full/10....

10.02.2025 01:49 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Post image

NEW PAPER: The @libererofellows.bsky.social team led by Dr. Schiller looked at what's working for species recovery in πŸ‡¨πŸ‡¦. Species recovery wasn't affected by human or financial capacity provided but was possible when the primary cause of decline was alleviated.
www.facetsjournal.com/doi/full/10....

04.02.2025 14:51 πŸ‘ 13 πŸ” 10 πŸ’¬ 0 πŸ“Œ 0
Preview
Award, Fellowship and Grants Opportunities Award, Fellowship and Grant Opportunities Below is a list of some of the ongoing award, fellowship and grant opportunities that we thought our members might be interested in. Use the hyperlinks to ju...

Terrific list of conservation-related funding opportunities, made by @society4conbio.bsky.social:

docs.google.com/document/d/1...

Please share!

#ConservationFunding #Conservation

30.01.2025 18:33 πŸ‘ 60 πŸ” 36 πŸ’¬ 1 πŸ“Œ 0
Preview
Environmental DNA Call for Papers - Understanding the Current Use of Environmental DNA in Southeast Asia: Promoting Accessibility through Networking and Capacity Building Environmental DNA is an open access eDNA journal that provides an international forum for basic & applied research on all areas of eDNA analysis.

If you are working on the use of environmental DNA in Southeast Asia or collaborating with researchers in the region, we invite you to submit a paper to the Environmental DNA journal's special issue. Deadline of submission is on July 31, 2025.

onlinelibrary.wiley.com/page/journal...

30.01.2025 23:08 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Post image

We invite researchers to contribute studies on eDNA use in Southeast Asia, focusing on innovative approaches, biodiversity monitoring, and strategies for overcoming regional challenges.

πŸ“… Submission Deadline: July 31, 2025

#eDNA #Biodiversity #Conservation #SoutheastAsia #EnvironmentalDNA

09.01.2025 10:40 πŸ‘ 8 πŸ” 2 πŸ’¬ 0 πŸ“Œ 1

This is so helpful and very timely, Aerin! Thanks for sharing!

05.12.2024 01:55 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Preview
A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: An application to fish eDNA surveys Understanding how ecological assemblages vary in space and time is essential for advancing our knowledge of biodiversity dynamics and ecosystem functioning. Metabarcoding of environmental DNA (eDN...

Tired of NMDS and other ordinations methods to represent your #eDNA metabarcoding data, consider using this approach: besjournals.onlinelibrary.wiley.com/doi/full/10....

02.12.2024 00:09 πŸ‘ 18 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
Preview
We’re hiring a Community Engagement Project Lead Apply by December 4, 2024, through the University of British Columbia-Okanagan.

We're #hiring a Community Engagement Project Lead! This position is responsible for working with Indigenous communities, government, and industry for the purpose of building and leading collaborative biodiversity monitoring and applied science initiatives.

wildlifescience.ca/community-en...

27.11.2024 19:30 πŸ‘ 9 πŸ” 8 πŸ’¬ 0 πŸ“Œ 1
Preview
Data Scientist and Developer - Victoria, BC - Indeed.com Tula Foundation

We're hiring! πŸ“£The Hakai Institute is looking for an experienced Data Scientist and Developer to work closely with the oceanography team.
View the full posting here πŸ”— tinyurl.com/3a9dmed7

25.11.2024 19:17 πŸ‘ 4 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0