Maizel lab

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development - Nature Plants Spatially resolved gene expression during barley development was done by integrating an scRNA-seq dataset from cells with unknown position with spatial transcriptomics. This dataset is publicly availa...

We recently published a first story on combining spatial and single cell transcriptomics in barley (see here: www.nature.com/articles/s41...)

Lets go for the next level now, i.e. understanding gene networks and barley meristem development in 4D!

Announcing the publication of TAIR12: Consult the fully reannotated genome on the European Nucleotide Archive - Phoenix Bioinformatics TAIR (The Arabidopsis Information Resource), together with our nonprofit host Phoenix Bioinformatics, is pleased to announce the public release of TAIR12

🎉📣 #TAIR12, the latest reannotation of the Arabidopsis thaliana genome, is now available under accession number PRJEB100887 on ENA and NCBI!

Thank you all the volunteer researchers whose hard work has made this possible!

#plantscience #plantbiology 🧪

bit.ly/3ZHtneT

dplyr 1.2.0 dplyr 1.2.0 fills in some important gaps in dplyr's API: we've added a new complement to `filter()` focused on dropping rows, and we've expanded the `case_when()` family with three new recoding and re...

dplyr 1.2.0 is out now and we are SO excited!

- `filter_out()` for dropping rows

- `recode_values()`, `replace_values()`, and `replace_when()` that join `case_when()` as a complete family of recoding/replacing tools

These are huge quality of life wins for #rstats!

tidyverse.org/blog/2026/02...

Save the date: Plant Development PhD school (i.e. Retzbach 2.0) in Neustadt, Germany.

Sept 23rd-25th, 2026
~€350 all inclusive

Excellent speakers and a relaxed atmosphere for early-career researchers (PhDs & postdocs). Registration opens soon.

For more info, see
raissiglab.org/plantdevosch...

Join us! We are going to have a ton of fun this summer with 2 week projects on plant and animal morphogenesis! @maizel-lab.org is leading a module. For my section we are going to live image developing leaves.

Short Talks and Discussion: Evolutionary Cell Biology meets Neuroscience – Yasin Dagdas and Simon Wiegert to speak as part of the “Bio(R)evolution – New Faces, New Ideas, New Horizons” series www.uni-heidelberg.de/en/newsroom/...

New preprint!
SOSEKI polarity proteins are mechanoresponsive integrators linking growth and tissue mechanics during lateral root formation. Their polarity marks growth boundaries and reorganises in response to mechanical alterations —reshaping how we think about axis formation.
tinyurl.com/28p7af2w

📢 It came to my attention that due to more restrictive recent regulations, our colleagues in Japan have immense difficulties shipping (receiving?) seeds by mail. Apparently, having someone carry them is the most reliable option. Anyone travelling soon from 🇯🇵 to 🇪🇺?

Our work on mapping the dynamics of phospholipids during lateral root formation is now published in @jxbotany.bsky.social We show that PI(4,5)P₂ plays a key role: targeted reduction in pericycle promotes LR development.
→ academic.oup.com/jxb/advance-...

Some Impressions of the FASEB Mechanism of Plant Development - 110 attendees, two keynotes, 46 Talks & 83 posters but one passion: understand plant development 🌱🧪🔬🧑‍💻 #PDevSRC

New preprint from the lab. We mapped the dynamics of phospholipids during lateral root formation and show that PI(4,5)P₂ plays a key role: targeted reduction in pericycle promotes LR development.
www.biorxiv.org/content/10.1...

🍀🔬

Split-YFP-coupled interaction–dependent TurboID identifies new functions of basal cell polarity in Arabidopsis @pnas.org from Juan Dong's lab.

www.pnas.org/doi/10.1073/...

Wound repair in plants guided by cell geometry Mathew et al. show that growth conflicts reshape cells after injury, forming rhomboidal geometries that trigger diagonal divisions. This reorients cell files to restore tapered morphology. A two-step ...

Our new paper is out!
1/14 How does an organ rebuild its shape after injury? It's not just about making new cells, but aligning them in the right direction — like bricks shaping a structure. We show that it's all driven by Cell Geometry!

www.cell.com/current-biol...

Final Program announced for the Mech. of Plant Development FASEB (Aug 24-28 in Southbridge MA USA).: tinyurl.com/2cfa8keo

From genes to patterns: five key dynamical systems concepts to decode developmental regulatory mechanisms Summary: Dynamical systems theory provides a powerful quantitative and intuitive framework to understand developmental processes. This Primer brings key concepts of this framework to the ever-growing ...

5 dynamical systems concepts every developmental biologist needs to know! This came out of the 2023 Morphogenesis Program. @pauformosa.bsky.social ‪@perez-carrasco.bsky.social‬
journals.biologists.com/dev/article/...

New KITP Program! #MORPHO26

Geometry and Intercellular Interactions in Morphogenesis of Animals and Plants

Dates: 7/20/2026 - 8/20/2026

This is how to get started with #tidyplots 🚀

tidyplots.org/getstarted

#rstats #dataviz #phd

We received 80 abstracts and have >100 registered participants for the Mech. of Plant Development FASEB (Aug 24-28 in Southbridge MA USA). Time for us to select ~20 talks from those 😱
It will be an exciting meeting!
FOMO? Still time to register! → tinyurl.com/24fsjq6a

GfE School 2025

Are you in Germany in September (25th-27th) and ready to present your science? no further hesitation and register for the 15th GfE School on "Lineages: Revealing how Cells make Embryos and Tissues" at Schloss Reisensburg: www.vbio.de/gfe-entwickl... all #devbio enthusiasts and interested welcome!

Deadline for abstract submission for the FASEB SRC “Mechanisms of Plant Development” is extended until July 13th! 🌱 Submit! It will be a fantastic meeting.
🗓️ August 24–28, 2025 | Southbridge, MA.
Details ➡️ tinyurl.com/24fsjq6a

The @maizel-lab.org & @schumacherlab.bsky.social are hiring!
Part-time lab manager position available immediately! Apply by June 30th 🇬🇧/🇩🇪
➡️ adb.zuv.uni-heidelberg.de/info/INFO_FD...

The GreenRobust cluster of Excellence is now live on Bluesky @greenrobust.de
Follow to be informed of the great things coming up 🌱

[3/3] 🌟 Keynote highlights!
We’re honoured to host:
🧠 @bradylabs.bsky.social – Benfey Memorial Lecture on Developmental Biology
🌱 @nikogeldner.bsky.social – Chory Memorial Lecture on Plant Signaling
Celebrating the legacies of Phil Benfey & Joanne Chory.
➡️ tinyurl.com/24fsjq6a

[2/3] 🗓️ Submit by June 29, 2025 to present your work at the FASEB SRC Mechanisms of Plant Development.
Submit here ➡️ tinyurl.com/24fsjq6a
Thanks to an agreement with AI2EAR (ai2ear.wordpress.ncsu.edu), non-tenured participants who register will be eligible to apply for limited financial support!

🚨 The FASEB SRC “Mechanisms of Plant Development” is happening this summer! 🌱
🗓️ August 24–28, 2025 | Southbridge, MA. A short thread [1/3]

We have an outstanding roster of confirmed speakers — it's shaping up to be a fantastic meeting.
Details ➡️ tinyurl.com/24fsjq6a

bsky.app/profile/fase...

France and Germany unveil Docs, a homegrown alternative to Google Docs The Trump administration has set out to drastically reshape the relationship between the US and Europe. In response, Brussels is scrambling to adapt to this new reality,...

The days of Google Docs are ending; we enter the age of Docs, made by France's Interministerial Directorate for Digital Affairs and Germany's Center for Digital Sovereignty of Public Administration.

We need more governments to collaborate on public software projects to achieve digital sovereignty.

Super-resolution expansion microscopy in plant roots The development of expansion microscopy in the Arabidopsis root enabled the imaging of molecular targets in tissues at diffraction-unlimited resolution.

Same verdict: it will be huge academic.oup.com/plcell/advan...

Root expansion microscopy: A robust method for super resolution imaging in Arabidopsis Root expansion microscopy (ROOT-ExM) achieves super-resolution expansion microscopy in plants.

This is going to be huge 😅https://academic.oup.com/plcell/article/37/4/koaf050/8109904

Root expansion microscopy: A robust method for super resolution imaging in Arabidopsis Root expansion microscopy (ROOT-ExM) achieves super-resolution expansion microscopy in plants.

Whaouhouh! @yohannboutte.bsky.social @emmanuellebayer.bsky.social Magalie Grison!!!

academic.oup.com/plcell/artic...

Spatial ploidy inference using quantitative imaging, our new collaborative work in the Polyploidy Integration & Innovative Institute, with the @roederlab.bsky.social and the Fox lab. Try our pipeline with your images!
www.biorxiv.org/content/10.1...