It's been a minute but I found my way back to a conference; I'll be at AGBT this week representing @stellaromics.bsky.social to lend my experience communicating all things #spatialbio #bioinformatics #techbio #ai ! Looking forward to meeting new folks, please reach out if interested! 🧬🔬
anarchy...?
Glad to be part of such an open and collaborative community pushing #SpatialBio forward! Thanks for inviting and hosting us @kevinyamauchi.bsky.social @lucamarconato.bsky.social & Giovanni Palla 🙏
I focused on the intro notebook and improving usability for first time users ⚒️ check it out! ->
but we have #fluorescentfriday here now too! 🧪🧬🔬
Spectacular stuff! Is Manu on BlueSky yet? 👀
Closing 2024, scverse celebrates growth and collaboration! Huge thanks to everyone on this journey and our core team & board (@fabiantheis.bsky.social, @francescafinotello.bsky.social, @steglelab.bsky.social, Nir Yosef, @panosroussos.bsky.social, @robp.bsky.social). Here's to an inspiring 2025!
pip install bento-tools==2.1.4
Oof, software releases are always so nerve racking 😅 just updated bento-tools.readthedocs.io to v2.1.4 🥳
We now support 1-to-many spatial indexing for mapping cells to multiple organelles/subcellular domains, enabling the modeling of complex spatial relationships! #spatialbiology 🧪🧬🖥️
super intuitive demo! given a sufficient amount of training data, I wonder if you find it more useful to train OCTO as a single foundation model or separate tissue-specific specialist models? since TMEs are so different between cancers
all they had to do was ask their favorite chat AI to plot it for them...
This looks amazing! Really appreciate the focus on documentation and usability.
makes sense, no sun no fun
that's a lot of git commits
I like this reframing of cell archetypes and the flexibility it allows by turning "cell type" into a combo of quantitative variables! Kind of like blending a palette of colors 🎨
I created a feed for #spatialbiology here! It's keyword based for most spatial omics terms. Give it a like if you find it useful, thanks! 🙏
📌
@skyview.social unroll
I'm not in NLP or javascript, but found compromise.cool is a very cool example of "less is more" ❤️ #opensource
Yup, here's the feed! Only posts and quote reskeets 😊
I guess the real question is, what do live-coding interviews measure in a candidate that is relevant to the job? And what are (better) alternatives if Astral has found any? 👀
Sign of the times, no more bluebird on the biorxiv engagement tab..
📌
📌 awesome time lapse
Hey science folks 🧪! Trying to stay on top of #SpatialBiology convos, tech, studies, conferences, etc.? Well here's a feed for you!
bsky.app/profile/did:...
oops feed in question: bsky.app/profile/did:...
add this feed, then reply to posts with the 📌 emoji! the feed author notes it's lagging a bit though
also @zchiang.bsky.social inventor of expansion in situ sequencing 🚥🔬
@lucamarconato.bsky.social ! my dear friend and creator of #SpatialData at #Scverse 😊
Standardized educational resources could also go a long way. Since it's part of scientific "training" maybe it could be formalized.
Thanks for your insight, makes sense!
Cool work @kinnaryshah.bsky.social 👏 any thoughts on whether the same assumptions hold and are applicable to model the mean variance relationship in the imaging-based spatial methods?
