Anna Sofia Tascini

🧬 "SurfR: Riding the wave of RNA-Seq data with a comprehensive Bioconductor package to identify Surface Protein Coding Genes" introduces SurfR, an R package enabling streamlined analysis of surface protein genes from #RNASeq data. doi.org/10.1093/bioa... #DataAnalysis @astascini.bsky.social

SurfR Identify Surface Protein coding genes from a list of candidates. Systematically download data from GEO and TCGA or use your own data. Perform DGE on bulk RNAseq data. Perform Meta-analysis. Descriptiv...

Download and try the R package here: www.bioconductor.org/packages/rel...

SurfR: Riding the wave of RNA-seq data with a comprehensive bioconductor package to identify surface protein-coding genes AbstractMotivation. Proteins at the cell surface connect signaling networks and largely determine a cell’s capacity to communicate and interact with its en

SurfR 🏄‍♂️ paper is now online🎉: A bioconductor Rpackage to surf the cells’ surfaceome 🧜‍♀️ starting from RNAseq data 🧬. Check it out here: academic.oup.com/bioinformati...