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Kitty Clouston

@kittyclouston

Engineering microbes for greener chemical production Into biotech, heavy music, climate & social justice ๐Ÿ“Edinburgh / Bangalore linktr.ee/kittyclouston

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29.11.2024
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Latest posts by Kitty Clouston @kittyclouston

I wasn't intending to turn this into a thread, but it seems to have happened anyway.
It's about the great plague on our lives: the extreme wealth of a tiny number of people.
And what to do about it.

10.03.2026 07:53 ๐Ÿ‘ 872 ๐Ÿ” 263 ๐Ÿ’ฌ 37 ๐Ÿ“Œ 3

How much more evidence do we need? The ultra-rich and the governments supporting them will destroy everything for the sake of profit, power and pride. Nothing is precious to them - not human life, not the living world - except their own wealth and status. Our survival depends on resisting them.

10.03.2026 07:26 ๐Ÿ‘ 7790 ๐Ÿ” 2632 ๐Ÿ’ฌ 234 ๐Ÿ“Œ 144
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New Editorial: "Celebrating photosynthesis" rdcu.be/e6oTm

Photosynthesis is both an elegantly simple and dazzlingly complex process. The year 2026 marks anniversaries of the discoveries of both of these layers.

02.03.2026 11:15 ๐Ÿ‘ 18 ๐Ÿ” 9 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1
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Scientists have seen Asgard archaea crawling for the first time. When it comes to the origin of eukaryotes, this is like seeing a feathered dinosaur in the wild. (Video courtesy of Philipp Ralder)

18.02.2026 20:09 ๐Ÿ‘ 470 ๐Ÿ” 136 ๐Ÿ’ฌ 10 ๐Ÿ“Œ 19

i appreciate labour taking a stronger line on racism

but it's a little incongruous when they're separating families, smearing asylum seekers as "illegal", & making the lives of legal residents harder to appease that same bigotry

12.02.2026 10:00 ๐Ÿ‘ 81 ๐Ÿ” 23 ๐Ÿ’ฌ 4 ๐Ÿ“Œ 1
Plant genome sequencing workflow. Details: https://doi.org/10.1186/s12864-026-12623-z

Plant genome sequencing workflow. Details: https://doi.org/10.1186/s12864-026-12623-z

Need a genome sequence of your favourite plant? We laid out instructions for a complete workflow based on ONT sequencing:

"Cookbook for plant genome sequences"
doi.org/10.1186/s128...

#Genomics #LongReads #PlantSciences #Bioinformatics
@puckerlab.bsky.social @unibonn.bsky.social

09.02.2026 05:56 ๐Ÿ‘ 46 ๐Ÿ” 22 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 0
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Bluesky Map Interactive map of 3.4 million Bluesky users, visualised by their follower pattern.

I made a map of 3.4 million Bluesky users - see if you can find yourself!

bluesky-map.theo.io

I've seen some similar projects, but IMO this seems to better capture some of the fine-grained detail

08.02.2026 22:59 ๐Ÿ‘ 7209 ๐Ÿ” 2164 ๐Ÿ’ฌ 658 ๐Ÿ“Œ 4578

Reposting this paper now with a working link! ๐Ÿ˜… www.sciencedirect.com/science/arti...

11.02.2026 08:15 ๐Ÿ‘ 5 ๐Ÿ” 2 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Bio-upcycling Waste Human Hair into Sustainable Haircare Chemicals at University of Edinburgh on FindAPhD.com PhD Project - Bio-upcycling Waste Human Hair into Sustainable Haircare Chemicals at University of Edinburgh, listed on FindAPhD.com

๐Ÿšจ 2 Fully Funded PhD Projects | Open to UK students ๐Ÿšจ

โ™ป๏ธ Weโ€™re recruiting another 2 PhD students to join The Wallace Lab as part of the Carbon-Loop Sustainable Manufacturing Hub, tackling some prolific but unconventional industrial waste streams!

Apply by 27th Feb ๐Ÿ—“๏ธ Details below โฌ‡๏ธ

Project 1.

10.02.2026 14:48 ๐Ÿ‘ 1 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
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Interfacing solar energy with bacterial metabolism for sustainable chemical synthesis Nature Reviews Clean Technology - Phototrophic bacteria could be used for chemical manufacturing from various carbon sources. This Review discusses the pathways, engineering and potential...

You can't think about a sustainable chemical industry without considering our most abundant energy source: sunlight.

So how can we engineer microbes to harness this energy for our benefit?

rdcu.be/e1VfW

02.02.2026 14:00 ๐Ÿ‘ 4 ๐Ÿ” 3 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
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How does molecular valency shape condensate assembly and function? We used the CO2-fixing organelle in algaeโ€”the pyrenoidโ€”to find outโ€ฆ ๐Ÿงต

Preprint here!:
www.biorxiv.org/content/10.6...

@cellarchlab.com @phaips.vd.st @biologyatyork.bsky.social
#Rubisco #PhaseSeparation #Condensates #Pyrenoid

30.01.2026 15:20 ๐Ÿ‘ 78 ๐Ÿ” 37 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 5
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The Coli Toolkit (CTK): An Extension of the Modular Yeast Toolkit for Use in E. coli Genetic circuits are a cornerstone of synthetic biology, enabling programmable control of cellular behavior for applications in health, sustainability, and biotechnology. While Genetic Design Automati...

Check out the the Coli Toolkit (CTK): an extension of the modular yeast toolkit for use in E. coli published in ACS Synthetic Biology by the group of Heinz Koeppl @tuda.bsky.social pubs.acs.org/doi/10.1021/...

02.02.2026 12:31 ๐Ÿ‘ 2 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

#ProtistsOnSky
no 'swimming' by ๐˜๐˜ข๐˜ฎ๐˜ฑ๐˜บ๐˜ณ๐˜ฆ๐˜ญ๐˜ญ๐˜ข, definitively no 'staying still'. just a relaxed walk towards the lunch...

02.02.2026 00:00 ๐Ÿ‘ 200 ๐Ÿ” 74 ๐Ÿ’ฌ 5 ๐Ÿ“Œ 5
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(PDF) Manual of SDS-PAGE and Immunoblotting Techniques PDF | This is a compilation made from Web pages that no longer exist, that were heavily accessed by people looking for basic methods for SDS-PAGE and... | Find, read and cite all the research you need...

I know I've shared this before, but seeing as I've just pulled it out for a PhD student for an obscure SDS-PAGE staining technique - CuCl2, as it happens - here it is again. A free SDS-PAGE and western blotting manual! www.researchgate.net/publication/...

02.02.2026 08:26 ๐Ÿ‘ 5 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

๐Ÿ”ฌ Our shiny new mega review is finally published! If youโ€™re interested in photosynthesis, engineering biology and sustainable chemistry, check it out โฌ‡๏ธ

30.01.2026 16:20 ๐Ÿ‘ 5 ๐Ÿ” 2 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 0
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Fig. 3: Biosynthetic production of industrially relevant chemicals by photosynthetic bacteria.

30.01.2026 17:48 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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Fig. 2: Engineering solar microorganisms for chemical production.

30.01.2026 17:48 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
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Please admire our beautiful figures.
Fig. 1: Overview of phototrophic bacterial metabolism.

30.01.2026 17:12 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
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Multiple protein structure alignment at scale with FoldMason Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...

FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social.
๐Ÿ“„ www.science.org/doi/10.1126/...
๐ŸŒ search.foldseek.com/foldmason
๐Ÿ’พ github.com/steineggerla...

30.01.2026 06:11 ๐Ÿ‘ 300 ๐Ÿ” 147 ๐Ÿ’ฌ 4 ๐Ÿ“Œ 3

Apologies to anyone expecting more Chlamydomonas content from me - no algae in this one, that would be a whole other review paper...

#cyanobacteria #greenchemistry #purplenonsulfurbacteria #review #sustainablemanufacturing @edinburghbiology.bsky.social

30.01.2026 16:26 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Many thanks also to our reviewers and the fantastic editorial team at @natrevcleantech.nature.com for their hard work getting this paper as polished as possible. It really takes a village ๐Ÿ“š

30.01.2026 16:24 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Massive appreciation to my primary collaborators on this paper, Dr Connor Trotter and @jfcsteele.bsky.social, to all other authors involved @louismarlow.bsky.social, @swallacelab.bsky.social, and to friends and colleagues in the cyanobacterial world for helpful conversations.

30.01.2026 16:23 ๐Ÿ‘ 1 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

In this article, we cover:
๐ŸŒž How bacteria can harness light energy to drive metabolism
โš™๏ธ Engineering strategies for solar-driven bacterial systems
โš›๏ธ Examples of bulk and high-value chemicals produced this way
โ™ป๏ธ Key challenges and future directions for scaling light-powered biomanufacturing

30.01.2026 16:21 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Light is one of the most abundant resources we have, and through cellular metabolism, microbes can synthesise a huge variety of chemicals, like tiny factories. Bringing these together, we take a deep dive into how light-driven bacterial systems can be used for more sustainable chemical production.

30.01.2026 16:21 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

๐Ÿ”ฌ Our shiny new mega review is finally published! If youโ€™re interested in photosynthesis, engineering biology and sustainable chemistry, check it out โฌ‡๏ธ

30.01.2026 16:20 ๐Ÿ‘ 5 ๐Ÿ” 2 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 0
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Happy 45th birthday to Once in a Lifetime by Talking Heads, released as a single on this day in 1981. Here's David introducing that video

30.01.2026 08:22 ๐Ÿ‘ 311 ๐Ÿ” 87 ๐Ÿ’ฌ 15 ๐Ÿ“Œ 18
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Microbial Systems for the Bio-Upcycling of Industrial Waste Streams into High-Value Chemicals at University of Edinburgh on FindAPhD.com PhD Project - Microbial Systems for the Bio-Upcycling of Industrial Waste Streams into High-Value Chemicals at University of Edinburgh, listed on FindAPhD.com

๐Ÿšจ PhD opportunity | Fully funded | Open worldwide ๐Ÿšจ

โ™ป๏ธ Weโ€™re recruiting aย fully funded PhD studentย to join The Wallace Lab at the University of Edinburgh as part of theย Carbon-Loop Hub, a ยฃ14M national programme re-imagining how chemicals are made.

Apply by 20th Feb 2026 ๐Ÿ—“๏ธ Details below โฌ‡๏ธ

30.01.2026 16:16 ๐Ÿ‘ 1 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

๐Ÿš€ New review paper out! We explore the current achievements and future potential of solar-driven bacterial metabolism to unlock greener routes to chemical synthesis, spotlighting opportunities and challenges for light-powered microbial biomanufacturing ๐ŸŒž๐Ÿ”ฌ

30.01.2026 15:06 ๐Ÿ‘ 2 ๐Ÿ” 1 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Check out our new review in Nature Reviews Genetics on de novo emerged genes and proteins. How they emerge, are lost and persist - and how de novo emerged proteins relate to randomized proteins! @bornberglab.bsky.social www.nature.com/articles/s41...

28.01.2026 18:23 ๐Ÿ‘ 58 ๐Ÿ” 28 ๐Ÿ’ฌ 3 ๐Ÿ“Œ 2
Bilbo looking at his phone top

on bottom is ChatGPT

After all, why not? Why shouldn't I keep it?

You're absolutely right โ€” you found it, it's been with you a long while, and it's only natural to feel fond of something that's served you so well, especially when someone like Gandalf suddenly seems to want it for himself.

Bilbo looking at his phone top on bottom is ChatGPT After all, why not? Why shouldn't I keep it? You're absolutely right โ€” you found it, it's been with you a long while, and it's only natural to feel fond of something that's served you so well, especially when someone like Gandalf suddenly seems to want it for himself.

28.01.2026 01:51 ๐Ÿ‘ 25425 ๐Ÿ” 6949 ๐Ÿ’ฌ 7 ๐Ÿ“Œ 155