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Conesa Lab

@conesalab

News from the Genomics of Gene Expression Lab at @i2sysbio.bsky.social @elcsic.bsky.social. Led by @anaconesa.bsky.social

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18.11.2024
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Latest posts by Conesa Lab @conesalab

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VALT Registration VALT 2026 will bring together leading researchers and professionals from around the world to share the latest advances and ideas in long-reads transcriptomics. This event offers an excellent opportuni...

We’re honored to host an incredible keynote lineup for #VALT2026 in Valencia! πŸ‡ͺπŸ‡Έ

πŸ”Ή Ana Conesa πŸ”Ή Angela Brooks πŸ”Ή Hagen Tilgner πŸ”Ή Eduardo Eyras πŸ”Ή Matthew Ritchie πŸ”Ή Gloria Sheynkman πŸ”Ή Kin Fai Au

Join us to discuss the future of long-read sequencing. 🧬

Register: www.biobam.com/valt-registr...

22.01.2026 11:07 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Europeans, assemble!!

The ConesaLab needs you to join us in a COST action.

Please, reach out if you can help us 🀝

02.10.2025 07:18 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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More than 70 people attend the 2nd Public-Private Collaboration Workshop organised by I2SysBio <p><strong>The Institute of Integrative Systems Biology (I2SysBio), a joint centre of the CSIC and the University of Valencia, held its Second Public-Private Collaboration Workshop under the title &#3...

Tuesday was an amazing day.
The @i2sysbio.es organized the II Jornada de ColaboraciΓ³n PΓΊblico-privada. We could meet the private sector and share our dreams and concerns with them.

www.i2sysbio.es/communicatio...

04.09.2025 09:07 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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La revoluciΓ³n de la secuenciaciΓ³n gΓ©nica: una lupa sobre el envejecimiento y las enfermedades que nos afectan al cumplir aΓ±os | Las Provincias La secuenciaciΓ³n de lectura larga permite analizar el envejecimiento celular con precisiΓ³n inΓ©dita, abriendo nuevas vΓ­as para comprender y retrasar este proceso

Check out this interview by a local newspaper of @anaconesa.bsky.social and @carolinamonzo.bsky.social

A dive into the world of long reads transcriptomics and aging!

www.lasprovincias.es/sociedad/can...

01.09.2025 09:03 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
July: From Valencia’s pool to Liverpool | Genomics of Gene Expression As summer has finally arrived, things in the ConesaLab have taken a more relaxed tone. To begin the month, Roc Martin came to visit us to learn about long-read transcriptomics. Roc was a participant…

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July at ConesaLab was packed! 🌞 From hosting Roc Martin, to poolside SQANTI3 chats, to teaching & presenting at LongTREC & ISMB/ECCB. Science, sun, & lots of RNA! β˜€οΈπŸ§¬
Read the full story πŸ‘‰ shorturl.at/UoE8y

04.08.2025 08:42 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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GitHub - ConesaLab/tappAS: This repository contains the source code for the tappAS application. See README for details. This repository contains the source code for the tappAS application. See README for details. - ConesaLab/tappAS

Hello everybody!
Great news from the lab, as Julen Santiago, one of our PhD Candidates, has done an amazing contribution to the SQANTI-verse. He has fixed tappAS! 🀩
Go to tappAS GitHub to download its latest relase and have fun!
github.com/ConesaLab/ta...

31.07.2025 10:32 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Sustainability on Action | Genomics of Gene Expression It all began as the best ideas begin, with a simple yet effective What if… ? One day Ana asked us and herself, What if we were more active towards sustainability when travelling? How can I bring…

Checkout our latest blogpost, with a recap of @anaconesa.bsky.social amazing trip to reach Norwich!

conesalab.uv.es/longtrec_of_...

15.07.2025 16:20 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1

We are so glad to be part of a doctoral network as incredible as @longtrec.bsky.social Saving the world at the same time as enjoying science and friendship!

14.07.2025 10:14 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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πŸ“£ We have kicked off at the Earlham Institute, and everyone is to learn all about #LongReadsTranscriptomics at our #LongTREC Summer School.

Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!

14.07.2025 09:03 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 2

One of our doctoral candidates, @tianyuanliu.bsky.social, has designed a unique T-shirt for our LongTREC bikers β€”promoting both our project and our sustainability initiative.
#LongCyclingForScience
#Teamwork

10.07.2025 21:56 πŸ‘ 7 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
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We’re kicking off a video series to showcase our network and its mission.
πŸŽ₯ Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.

@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics πŸ”¬ #Outreach4Science ✍

10.07.2025 16:18 πŸ‘ 8 πŸ” 6 πŸ’¬ 0 πŸ“Œ 2
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Last day at the @segenetica.bsky.social conference is dedicated to teaching and outreaching. Encarna GuillΓ©n, president of the Spanish human genetics society opens the session talking about genetics and medicine from an academic point of view. Spain doesn’t have a genetic specialist in medicine yet

11.07.2025 07:12 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

The best active sustainability thread that you will see today. Putting things into action is what matters in the long run!

Congrats to @anaconesa.bsky.social and all the @longtrec.bsky.social for taking this step foward! πŸ’ͺ

10.07.2025 12:24 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
BioHackathon Europe Find out about the 2025 BioHackathon Europe, where hackers get together to make life science research easier.

ConesaLab is heading to #BioHackathlon2025 in Berlin! We're updating long-read RNA-Seq benchmarks to reflect today’s tools & protocolsβ€”building on LRGASP and boosting reproducibility in transcriptomics. #LongReadRNA #Bioinformatics #ELIXIR
shorturl.at/C7aS6

01.07.2025 09:48 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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πŸš€ SQANTI-verse Cards are here! ✨
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse

03.06.2025 09:50 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Transcriptomics in the era of long-read sequencing - Nature Reviews Genetics Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including expe...

Transcriptomics in the era of long-read sequencing go.nature.com/421ZTJm #Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @i2sysbio.bsky.social

28.03.2025 11:04 πŸ‘ 68 πŸ” 28 πŸ’¬ 1 πŸ“Œ 7
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Transcriptomics in the era of long-read sequencing Nature Reviews Genetics - Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read...

So proud to see @carolinamonzo.bsky.social publishing yet another fantastic paper about transcriptomics. Check out her review that has just been published in Nature Review Genetics ;-)
shorturl.at/KeDAf

28.03.2025 12:14 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

It's finally out!!!! Our review on long-reads transcriptomics was published in @natrevgenet.bsky.social!! You can have a look at the paper here rdcu.be/efugl! We hope you like it πŸ˜€

28.03.2025 11:25 πŸ‘ 27 πŸ” 10 πŸ’¬ 2 πŸ“Œ 0
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Single-cell profiling of the human endometrium in polycystic ovary syndrome - Nature Medicine A transcriptomic atlas of the endometrium of women with polycystic ovary syndrome uncovers both disease signatures and potential therapeutic targets.

Single-cell profiling of the human endometrium in polycystic ovary syndrome. #NatureMedicine

This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.

www.nature.com/articles/s41...

25.03.2025 05:48 πŸ‘ 18 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0

πŸœπŸ”
Os presento Ant Hunters, un proyecto de ciencia ciudadana en el que puedes ayudar a investigadores del CSIC a estudiar su biodiversidad. Solo necesitas agua con azΓΊcar y ganas de explorar.
πŸ‘‰ anthunters.github.io #CienciaCiudadana #Hormigas

24.03.2025 17:25 πŸ‘ 13 πŸ” 13 πŸ’¬ 1 πŸ“Œ 0
GitHub - ConesaLab/MOSim: Bulk and single-cell Multi-Omics ground truth Simulator in R Bulk and single-cell Multi-Omics ground truth Simulator in R - ConesaLab/MOSim

Introducing MOSim! πŸš€ A powerful tool created by @carolinamonzo.bsky.social for simulating bulk & single-cell multi-omics data. Perfect for testing methods & exploring complex biological systems.
Available now on GitHub & Bioconductor. #MOSim #MultiOmics
github.com/ConesaLab/MO...

25.03.2025 07:20 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Yesterday, to celebrate the day of the Woman in Science, our superstars @anaconesa.bsky.social and @carolinamonzo.bsky.social went to high-schools to showcase and inspire future generations of scientist. πŸ‘©β€πŸ”¬

12.02.2025 07:48 πŸ‘ 8 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Last week, @quiquevb.bsky.social went to Laussane in Swizterland to attend the Spatial Omics Data Analysis" hosted by @sib.swiss Swiss Institue of Bioinformatics (ELIXIR-CH) in collaboration with the ELIXIR Single-Cell Omics community. So much learnt in one week, amazing! 🧠

27.01.2025 10:52 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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As well, we had our first strategy meeting for out 2025 social media strategy. Stay tuned, since changes are coming that will leave you wanting more of our amazing #ConesaBar πŸ’ƒ

14.01.2025 14:09 πŸ‘ 6 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

Attention people of Bluesky! Today, we had a double celebration. Alejandro has gotten his paper published #ConesaLab πŸ§‘β€πŸ”¬ genome.cshlp.org/content/earl...

14.01.2025 14:09 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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On Monday, @anaconesa.bsky.social gave a summary of this year at ConesaLab for the I2SysBio, and WOW! We end the year with 6 new positions, ready to rock and deliver next year. As well, many papers and tools have been published, like everybody's favorite SQANTI3 or scMaSigPro! Stay tuned for 2025! 🀩

11.12.2024 11:07 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Clara presenting our latest tool MOSim during the Theoretical and Computational Systems Biology seminar.

Clara presenting our latest tool MOSim during the Theoretical and Computational Systems Biology seminar.

Today, our amazing postdoc @carolinamonzo.bsky.social gave a seminar on Theoretical and Computational Systems Biology and our classic novel tool MOSim. This R package simulates multi-omics bulk & single-cell gene expression & regulatory mechanisms. Perfect for exploring complex cellular systems! πŸ”¬πŸ“Š

05.12.2024 14:58 πŸ‘ 11 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1

Of course, this work would not be possible without the support of Garnatxa (the @i2sysbio.bsky.social HPC cluster), @csic.es, and funding from the INFRAS (BCBhubCSIC), FPU, FPI and MSCA grants.

04.12.2024 09:52 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Special mention to the main developers of this release: FabiΓ‘n, Alejandro, Ángeles, Netanya and @carolinamonzo.bsky.social. Awesome work!! πŸŽ‰

04.12.2024 09:23 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

A giant welcome to our newest lab members!! Carlos and Julen to begin their PhD, Pablo for software development within the Oscars project, and great visitors from LongTREC project!! πŸŽ‰πŸ’ƒ

04.12.2024 09:19 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0