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Cedric Allier

@allierced

Senior Scientist @HHMIJanelia

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29.08.2025
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Latest posts by Cedric Allier @allierced

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Graph neural networks recover interpretable circuit models from neural activity
saalfeldlab.github.io/flyvis-gnn/
@HHMIJanelia
@AllenInstitute
to be presented at @CosyneMeeting

10.03.2026 15:47 πŸ‘ 5 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies
arxiv.org/abs/2602.13325
saalfeldlab.github.io/neural-gnn/
@hhmijanelia.bsky.social

21.02.2026 12:23 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies Graph neural networks trained to predict observable dynamics can be used to decompose the temporal activity of complex heterogeneous systems into simple, interpretable representations. Here we apply t...

This is work that we presented at last year's #Cosyne workshop on #GNN s sites.google.com/bu.edu/gnnwo.... Better late than never. You can reproduce everything with the associated notebooks. I think it's a good start to learn how to use GNNs to infer something about NNs. arxiv.org/abs/2602.13325

17.02.2026 18:27 πŸ‘ 11 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies
arxiv.org/abs/2602.13325
saalfeldlab.github.io/neural-gnn/
@hhmijanelia.bsky.social

18.02.2026 00:25 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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github.com/allierc/Fluo-BPM
@hhmijanelia.bsky.social
Fluo + RI: differentiable beam propagation method

01.11.2025 20:14 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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github.com/allierc/MPM_pytorch
@HHMIJanelia
pytorch version of github.com/taichi-dev/taichi

26.10.2025 21:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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github.com/allierc/MPM_pytorch
@HHMIJanelia
pytorch version of github.com/taichi-dev/taichi

26.10.2025 17:19 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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github.com/allierc/MPM_pytorch
@HHMIJanelia
pytorch version of github.com/taichi-dev/taichi

25.10.2025 15:56 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Join the team at Janelia to use #theory, computation, and modeling to tackle bold questions in #biology. Collaborate across scientific disciplines to drive discovery.

Apply by Nov. 3 @ https://janelia.link/theoryfellowprogram

#computationalbiology #sciencecareers

23.10.2025 17:00 πŸ‘ 9 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
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@hhmijanelia.bsky.social
C.Elegans neuron activity

23.10.2025 22:50 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

you nailed it

30.08.2025 11:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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✨ We’re #hiring Theory Fellows!✨

Janelia is recruiting early-career scientists to join our collaborative research environment and use #computation & #theory to tackle bold questions in #biology.

πŸ”— Apply by Nov. 3 πŸ‘‰ janelia.link/theoryfellow...
@hhmi.org

05.08.2025 18:01 πŸ‘ 14 πŸ” 10 πŸ’¬ 1 πŸ“Œ 1
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github.com/allierc/MPM_pytorch
@HHMIJanelia
pytorch version of github.com/yuanming-hu/...

29.08.2025 11:41 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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github.com/allierc/MPM_pytorch
@HHMIJanelia
pytorch version of github.com/yuanming-hu/...

29.08.2025 11:37 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0