#AnnData

Latest posts tagged with #AnnData on Bluesky

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Posts tagged #AnnData

Rémi Trimbour - MD-PhD student

@remitrimbour.bsky.social

5 months ago

CIRCE is a Python package based on #AnnData and fully compatible with the #scverse environment.

You can extract DNA region modules & visualize CIRCE's interactions over gene locations.

CIRCE also facilitates #CellOracle or #HuMMuS usage, making it unnecessary to run Cicero (code in R) first.

4/5

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@naveed-ishaque.bsky.social

1 year ago

GitHub - HiDiHlabs/SpatialLeiden: Implementation of multiplex Leiden for analysis of spatial omics data Implementation of multiplex Leiden for analysis of spatial omics data - HiDiHlabs/SpatialLeiden

SpatialLeiden integrates with the #scverse by leveraging #scanpy and #anndata but can also be used independently.
GitHub: github.com/HiDiHlabs/sp...
RtD: spatialleiden.readthedocs.io/stable/

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