#CodonUsage

@zeynepbaharoglu.bsky.social

1 month ago

Synonymous codon usage defines functional gene families - BMC Biology Background The degeneracy of the genetic code is increasingly recognized for roles in regulating translation rate, protein folding, and cell response. However, the functional genomics of codon usage p...

Signature codon usage patterns define functional gene families, this is in yeast and could be also very informative for bacteria and link with tRNA modifs #rnasky #codonusage #rnabiology #rnamodifications

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Kuba Sawicki

@kubasawicki.bsky.social

9 months ago

RSCUcaller: an R package for analyzing differences in relative synonymous codon usage (RSCU) - BMC Bioinformatics Background Synonymous codon usage bias, a significant factor in gene expression and genome evolution, was extensively studied in genomics and molecular biology. Although the genetic code is universal,...

Excited to share our new paper in BMC Bioinformatics! We present RSCUcaller, a user-friendly R package to analyze synonymous codon usage bias. It's a versatile tool for genomics & molecular biology research. #RStats #Bioinformatics #CodonUsage bmcbioinformatics.biomedcentral.com/articles/10....

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James McInerney

@jomcinerney.bsky.social

9 months ago

🔗 Ready to analyze your codon usage? GCUA makes sophisticated codon bias analysis accessible to everyone.
#Bioinformatics #CodingSequences #CodonUsage #Python #Genomics #MolecularEvolution #SyntheticBiology #GeneExpression #Optimization

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Anouk Willemsen

@willemsenanouk.bsky.social

1 year ago

We sequenced some new #genomes!

Novel high-quality #amoeba genomes reveal widespread #codonUsage mismatch between #giantViruses and their hosts.

doi.org/10.1101/2024...

#ProtistsOnSky #MicroSky 🖥️🧬

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Posts tagged #CodonUsage