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Posts tagged #DADA2

Grimm
Grimm
@grimmiges.bsky.social
5 months ago
Preview
Pruning the Tree: Comparing OTUs and ASVs in High‐Throughput Sequencing of 5S‐IGS Nuclear Ribosomal DNA in Phylogenetic Studies We compared the efficiency of operational taxonomic units (OTUs) and amplicon sequence variants (ASVs) of the 5S nrDNA arrays in evolutionary studies of a prominent tree genus of the Northern Hemisph....

Now out: doi.org/10.1002/ece3...
#OTU vs. #ASV, #Mothur vs. #DADA2 or how to get down from 100,000 sequences to the 100 really needed. A test on 5S intergenic spacer pools of #beech
#OpenAccess #Genotaxonomy #Reticulate #Evolution #nrDNA

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Ahmed Abdelfattah
Ahmed Abdelfattah
@aabdelfattah.bsky.social
1 year ago

Microbiome analysis is evolving rapidly! Tools like #QIIME2, #DADA2, and #Kraken2 have transformed how we analyze microbial communities. Which one do you prefer? Anything new?
#Bioinformatics #Microbiome

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