#ERGAReads | Genome size estimation from long read overlaps 🧑💻 🧬
🔗 academic.oup.com/bioinformati...
#bioinformatics #genomesize #Longreads
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#ERGAReads
Latest posts tagged with #ERGAReads on Bluesky
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Posts tagged #ERGAReads
#ERGAReads | Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 🧬
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
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#ERGAReads | Identifying Key Biodiversity Areas Based on Distinct Genetic Diversity
🔗 onlinelibrary.wiley.com/share/ET4N3X... @unitrier.bsky.social @ipna.csic.es
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#ERGAReads | A Beginner's Guide to Structural Variants in Eco-Evolutionary Population Genomics 🧬
🔗 onlinelibrary.wiley.com/doi/10.1111/...
#MolecularEcology #structuralvariants #genomics #PopulationGenomics @rebekahoomen.bsky.social @clairemerot.bsky.social
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#ERGAReads | IChromosome-scale Genomes Show Rapid Diversification and Ancient Gene Flow Among Bear Species 🐻
🔗 doi.org/10.1093/gbe/...
@genomebiolevol.bsky.social
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#ERGAReads | On the path to reference genomes for all biodiversity: laboratory protocols & lessons learned from processing over 2,000 species in the Sanger Tree of Life
🔗 academic.oup.com/gigascience/... @sangerinstitute.bsky.social @ebpgenome.bsky.social
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#ERGAReads | The Genomic Kaleidoscope: On the Hidden Dimensions of Within-Species Genomic Diversity 🌈🧬
🔗 academic.oup.com/gbe/article/...
@genomebiolevol.bsky.social @unil.bsky.social @embl.org @mpi-bio-fml.bsky.social @univie.ac.at @uab.cat
#genomics #genomicdiversity
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#ERGAReads | Integrative #phylogenomics positions sponges at the root of the animal tree
🔗 www.science.org/doi/10.1126/... 🧬
#porifera #sponges #phylogenomics
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#ERGAReads | We start the year by highlighting our partner Project Psyche: reference genomes for all Lepidoptera in Europe! 🦋 🌍 🧬 @projectpsyche.bsky.social
🔗 www.cell.com/trends/ecolo...
#butterflies #moths #genomes
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#ERGAReads | The #VGP @genomeark team built rdeval, a tool to quickly compute, store & visualise sequencing read stats. From FASTQ to snapshot files & visual reports, speeding up data quality checks at scale.
🔗 academic.oup.com/bioinformati... @giulio_formenti @erichjarvis
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#ERGAReads 🌍 Amphibians & reptiles face global change but many regions lack the genomic data needed to guide conservation. This review maps genomic “coldspots,” revealing gaps in adaptive potential studies & calling for stronger global collaborations.
onlinelibrary.wiley.com/doi/10.1111/...
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#ERGAReads | A new statistic (IDrisk) to quantify how long runs of homozygosity (ROHs) and heterozygosity in non-ROH regions can be used to predict the risk of inbreeding depression in a population.
🔗 www.cell.com/trends/ecolo...
#conservation #genomics #inbreeding @sandiegozoo.bsky.social
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#ERGAReads | Clitellates - terrestrial & freshwater annelids - underwent dramatic #genome reshuffling, losing synteny with their marine relatives. This rare burst of genomic change reshaped chromosome structure in the group
🔗 rdcu.be/euNbT
#genomics #evolution #Annelida @rosafernandez.bsky.social
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#ERGAReads | To unlock the full power of #genomics in biodiversity conservation, we need harmonised standards for genome-wide analyses. A new @ergabiodiv.bsky.social review calls for stakeholder-informed best practices to guide future efforts.
🔗 onlinelibrary.wiley.com/doi/10.1111/...
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#ERGAReads | Amphibians are among the most threatened vertebrates 🐸 The Amphibian Genomics Consortium unites 280+ scientists to advance genomic resources and conservation efforts for this vital, understudied group.
🔗https://doi.org/10.1186/s12864-024-10899-7
#genomics #amphibians #conservation
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#ERGAReads | Can sex chromosomes reveal what autosomes miss?
This study on red deer 🦌 compares autosomal vs. X-chromosome data from 144 genomes, uncovering contrasting population histories. The X chromosome better preserves signals from Late Glacial isolation.
🔗 doi.org/10.1093/molb...
#Genomics
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#ERGAReads | 13 new high-quality cetacean genomes produced by the Cetacean Genomes Project offer key insights into the group's ancestry and adaptation 🐬🐋🧬
🔗 www.frontiersin.org/journals/mar...
#genomics #conservation #cetaceans @ebpgenome.bsky.social @vertebrategenomes.bsky.social @noaa.gov
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#ERGAReads | Over 10,000 species are listed as Critically Endangered by the IUCN. This review highlights global patterns, threats & actions needed, calling for urgent investment to prevent extinctions 🌍🦎🌿
🔗 rdcu.be/euM65
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#ERGAReads | Comparative analysis of 163 ant genomes uncovers how #genome rearrangements, gene family expansions and selection shaped the evolution of caste systems and social complexity in ants 🐜🧬
🔗 www.cell.com/cell/fulltex...
@cellpress.bsky.social
#ants #evolution #socialevolution
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#ERGAReads | Analysis of 3 pentaploid dogrose genomes provide insights into their unique reproductive strategies & advance our understanding of genome #evolution and meiotic mechanisms in organisms with asymmetrical inheritance systems 🏵️
🔗 www.nature.com/articles/s41...
@sgn.one @ceplas.bsky.social
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#ERGAReads | The Arthropoda Assembly Assessment Catalogue offers an automated, interactive overview of #genome assembly quality across arthropods using #BUSCOs🪲🦟🐛
A tool for tracking coverage & guiding future sequencing efforts.
🔗 doi.org/10.1093/giga...
#Genomics #Arthropoda #BUSCO
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#ERGAReads | The California Conservation Genomics Project (CCGP) is setting a new benchmark in large-scale landscape #genomics for #conservation. 🌿🌊 #CCGP aims to map genomic diversity, connectivity and climate resilience across California’s ecosystems.
🔗 doi.org/10.1093/jher...
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#ERGAReads | This week, we highlight Squalomix, our newest associated partner 🦈🧬 #Squalomix tackles key challenges in #elasmobranch genomics through advanced cytological techniques and high-fidelity long-read sequencing.
🔗 f1000research.com/articles/11-...
@kurakulabmsm.bsky.social #sharks #rays
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#ERGAReads | @ebpgenome.bsky.social aims to generate high-quality reference #genomes across the tree of life 🌍
This new paper outlines evolving standards for sample acquisition & processing and key challenges for the future of the project.
🔗 doi.org/10.1093/giga... #bestpractices #samplecollection
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#ERGAReads | Scientific #data analysis should be scalable, transparent, and shareable - yet computational #workflows are often fragmented and hard to find. #WorkflowHub tackles this with a unified registry that promotes reproducibility, and #FAIRdata:
🔗 www.nature.com/articles/s41...
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#ERGAReads | How do human pressures affect #biodiversity across ecosystems? This global meta-analysis of 2,000+ publications reveals that the direction and magnitude of changes vary across stressors, organisms and scales at which they are studied.
🔗 www.nature.com/articles/s41...
#BiodiversityDay
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#ERGAReads | Can #genomic analysis estimate past population size? ⌛️📉
Sequentially Markovian coalescent #SMC methods can lead to misleading estimates. Cross-disciplinary collaboration is needed to interpret them accurately. 🧬
🔗 Read more: www.cell.com/trends/genet... @qmul.ac.uk
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#ERGAReads | How much media attention does #biodiversity get? 📉 Not nearly enough.
This study compares media & search interest in #COP15 vs #COP27 and... Taylor Swift 🎤🌍 Bridging this attention gap is crucial to achieving global #conservation goals.
🔗 rdcu.be/eiJ0A
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#ERGAReads | Despite rapid chromosome changes, sedges maintain conserved synteny - likely due to repetitive DNA shaping recombination and gene order. This may explain how they retain species cohesion despite high rates of #chromosome evolution. 🧬
🔗 doi.org/10.1111/mec....
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