Latest posts tagged with #GenomeMining on Bluesky
Actinomycetes under the spotlight: screening 940 genomes revealed 54 candidate phosphonate producers, with 21 strains confirmed, including Kitasatospora fiedleri carrying a unique, regulator controlled biosynthetic cluster.
Learn more: tinyurl.com/y43tk58n
#Phosphonate #Actinomycetes #GenomeMining
How can #GenomeMining accelerate the discovery of phosphonate #NaturalProduct producers?🦠
New research from @leibniz-dsmz.bsky.social and @unituebingen.bsky.social highlights actinomycetes as a rich source of novel bioactive phosphonates.
👉Read the full article here doi.org/10.1039/D5CB...
🚨 New Preprint Alert 🚨
Proud of @elenadelpup.bsky.social for posting her preprint on plantiSMASH 2.0 👏 Find out all about it and links to give it a try in her thread 👇
#genomemining #plants #geneclusters #naturalproducts #discovery
#ProudPI
@w-u-r.bsky.social
Check out the Ziemert Lab’s new YouTube channel
m.youtube.com/@ZiemertLab
We’ve uploaded short tutorial videos on how to use our tools for genome mining and natural product discovery.
Thanks Semih, @martinaadamek.bsky.social @turgutmesut.bsky.social ! #GenomeMining #SecMet #naturalproducts
New publication: #Genomemining based on transcriptional regulatory networks uncovers a novel locus involved in #desferrioxamine biosynthesis, by @gillesvanwezel.bsky.social and others.
doi.org/10.1371/jour...
Big thanks to the team @Rothamsted, collaborators, and funders @BBSRC as part of the Growing Health Institute Strategic Programme.
Feedback welcome!
#preprint #microbiology #secondarymetabolites #genomemining #plantpathology
And more #NaturalProduct #GenomeMining with Eric Helfrich from @goetheuni.bsky.social who is targeting the fascinating "unknowns" side of Rumsfeld's Matrix! His lab is mining atropopeptide and non-canonical terpenoid biosynthetic gene clusters with #AI-driven #ML-based predictions. #IPBSymposium2025
Now, @nadineziemert.bsky.social is showing how she predicts #NaturalProducts diversity in bacteria with #ComputationalGenomics #GenomeMining. Check out some of her tools:
🛠️ bgc-atlas.cs.uni-tuebingen.de
#GeneClusters
🛠️ automlst2.ziemertlab.com
#Phylogenies
🛠️ arts.ziemertlab.com
#Antibiotics
Our paper on #biosynthetic genes coding for ribosomal #peptides is out now: rdcu.be/ekux7! We present the 1st report of #RiPP-BGCs presence & diversity in #lichens. Spoiler: they’re ubiquitous & make up ~15–20% of #BGCs. #secondarymetabolites #fungi #genomeMining
Happy to share some of my PhD results at UNAM CCG
! #Ambystoma #Chytridiomycosis #Amphibian #skinmicrobiome #Botrytiscinerea #genomemining #antifungal #axolotl
link.springer.com/article/10.1...
Available online - the Spotlight "Journey to the past: #MolecularDeextinction enables the discovery of ancient β-#defensins and highlights their evolutionary history" from @fgosti.bsky.social.
#moleculardynamicsimulation #genomemining #antimicrobialpeptides
authors.elsevier.com/a/1kK%7EK3S6...
Does anybody know if Bluesky feeds into @altmetric.com yet?
This seems an important step to make this platform a viable replacement to X for scientists
#secmet #natprod #genomemining #science
1/3
Precomputed SocialGene database dumps are now available on AWS for free download (>340k genomes, >2 million BGCs, etc.)
#knowledgegraphs #genomemining #secmet
www.biorxiv.org/content/10.1...
registry.opendata.aws/socialgene/
socialgene.github.io/precomputed_...
That was a great MARBLES EU Project meeting nearby Copenhagen, Denmark - great science & great food, nice people, a wonderful location, and breakfast with a view 😎 Many thanks to Lone Gram & Gilles van Wezel for the coordination! #genomemining #metabolomics #marine #microbiology
Next step: "Hacking" the biosynthetic genes to create novel specialised metabolites #NaturalProducts #GenomeMining
