#MultiQC

MultiQC

@multiqc.info

11 months ago

Another quality of life improvement is that we now have a #JSONschema via @pydantic.dev for #MultiQC configuration files 🎉

This has been added to schemastore.org so that config files in #VSCode & other IDEs automatically get integrated error checking as you type, see docs.seqera.io/multiqc/gett...

MultiQC

@multiqc.info

11 months ago

a man in a red sweater is dancing in a living room in front of a fireplace . ALT: a man in a red sweater is dancing in a living room in front of a fireplace .

Did you see, #MultiQC v1.28 went out a few days ago!

There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif

Miss Salmonella

@misssalmonella.bsky.social

1 year ago

MultiQC | Seqera Aggregate results from bioinformatics analyses across many samples into a single report

One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!

seqera.io/multiqc/

github.com/MultiQC/Mult...

MultiQC

@multiqc.info

1 year ago

The premise is fairly simple: #MultiQC can now build prompts including sample data and send these to LLM services to get summaries.

This can be done at report-generation time, with the summary is part of the HTML. But also *interactively* on-demand when reading the report.

Erin Young

@erinyoung.bsky.social

2 years ago

Whole genome sequencing and pan-genome analysis of Staphylococcus/Mammaliicoccus spp. isolated from ... Background Diabetic foot infections (DFIs) are the most common complications of diabetic foot ulcers (DFUs), and a significant cause of lower extremity amputation. In this study we used whole genome s...

This figure gives me an idea for a #multiqc module for roary or panaroo. I'm sharing this here so it's easier for me to find later.