#PLOSCBTSR

BF Francis Ouellette

@bffo.bsky.social

2 weeks ago

Ten simple rules for building a collaborative coding culture

From @sciencebanshee.bsky.social @shen4brains.bsky.social @analog-ashley.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for building a collaborative #coding #culture | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

2 weeks ago

Ten simple rules for coordinating a large digital health project: Perspectives from EU and implications for global contexts Coordinating a large-scale digital health project requires a unique mix of scientific leadership, administrative skill, and human sensitivity. Drawing from our experience leading CAPABLE, a European H...

From @plos.org #Computational #Biology | Ten simple rules for coordinating a large #digital #health project: Perspectives from EU and implications for global contexts | #Education #Bioinformatics #Research #Healthcare #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

1 month ago

As a reminder to future #Computational #Biology Quick Tips or Ten Simple Rules (or any #PLOSCB #Education paper #PLOSCBTSR #PLOSCBQT):

There are no publication charges for those papers. The attached text is from the last paragraph of our TSR on Quick Tips paper.

doi.org/10.1371/jour...

BF Francis Ouellette

@bffo.bsky.social

2 months ago

From @plos.org #Computational #Biology | Ten simple rules on how to set up an Innovation Boot Camp for exploitation of research results | #Education #Bioinformatics #OpenScience #OpenData #PLOSCBTSR 🧬 🖥️ 🧪 🔓 🇩🇪🇪🇸🇳🇴🇮🇹
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

2 months ago

Ten simple rules for running a virtual program to introduce computational biology at the high school level

From @jchowning.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for running a virtual program to introduce computational biology at the high school level | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

3 months ago

("PLoS computational biology"[Journal]) AND ("ten simple rules" [Title]) - Search Results - PubMed ("PLoS computational biology"[Journal]) AND ("ten simple rules" [Title]) - Search Results - PubMed

In @plos.org #Computational #Biology, there are now 300 "Ten Simple Rules" papers | #Education #Bioinformatics #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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pubmed.ncbi.nlm.nih.gov?term=%28%22P...

BF Francis Ouellette

@bffo.bsky.social

3 months ago

Ten simple rules for effective research data management

From @plos.org #Computational #Biology | Ten simple rules 4 effective research data management | I like all of the rules, but I always like to see Rule 6: Work on comprehensive docs | #Education #Bioinformatics #FAIR #PLOSCBTSR #OpenScience #OpenData 🧬 🖥️ 🧪 🔓🇩🇪
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

3 months ago

Ten simple rules for maximizing summer research experiences for students, mentors, and research groups Whether hosted by colleges, universities, stand-alone research institutions, federal research labs, or private companies, immersive summer (6–12 weeks) research experiences build students’ confidence ...

From @wormsense.bsky.social in @plos.org #Computational #Biology | Ten simple rules for maximizing summer research experiences for students, mentors, & research groups | ❤️ Rule 1: A great short-term project is like a great short film | #Education #PLOSCBTSR 🧪🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

3 months ago

From @plos.org #Computational #Biology | Ten simple rules for early-career researchers supervising short-term student projects | #Education #Bioinformatics #OpenScience #PLOSCBTSR #ECR 🧪 🔓 CC/ @knaegle.bsky.social
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

4 months ago

Ten simple rules for making biomedical data resources accessible

From @ngehlenborg.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for making biomedical data resources accessible | I like Rule 10:Focus on progress over perfection | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

4 months ago

Ten simple rules for optimal and careful use of generative AI in science

From @drtamermansour.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for optimal and careful use of generative AI in #science | #Education #Bioinformatics #GenAI #AI #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

5 months ago

Ten simple rules for building and maintaining sustainable high-performance computing infrastructure for research in resource-limited settings

From @plos.org #Computational #Biology | Ten simple rules for building and maintaining sustainable high-performance computing infrastructure for research in resource-limited settings | #Africa #HPC #PLOSCBTSR 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

6 months ago

Ten simple rules for training by researchers for researchers in a rapidly evolving workforce

From @plos.org #Computational #Biology | Ten simple rules for training by researchers for researchers in a rapidly evolving workforce | #Education #Bioinformatics #PLOSCBTSR #Rstats #OpenScience 🧬 🖥️ 🧪 🔓 CC/ @carpentries.carpentries.org @rladies.org
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

6 months ago

Yes, two related papers:
- Ten simple rules for being a co-author on a many-author non-empirical paper
- Ten simple rules for leading a many-author non-empirical paper
| #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬🖥️ 🧪🔓
⬇️
journals.plos.org/ploscompbiol...
journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

6 months ago

Yes, two related papers:
- Ten simple rules for being a co-author on a many-author non-empirical paper
- Ten simple rules for leading a many-author non-empirical paper
| #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬🖥️ 🧪🔓
⬇️
journals.plos.org/ploscompbiol...
journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

6 months ago

Ten simple rules for being a co-author on a many-author non-empirical paper Many-author non-empirical papers include “how to” articles, recommendations or consensus statements, roadmaps for future research, catalogs of ideas, or calls to action. These papers benefit the resea...

From @plos.org #Computational #Biology | Ten simple rules for being a co-author on a many-author non-empirical paper | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

6 months ago

Ten simple rules for leading a many-author non-empirical paper Many-author non-empirical papers include recommendations or consensus statements, catalogs of ideas, roadmaps for future research, calls to action, or “how to” articles. These papers have great potent...

From @plos.org #Computational #Biology | Ten simple rules for leading a many-author non-empirical paper | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
⬇️
journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

7 months ago

Ten simple rules for research with humans

From @plos.org #Computational #Biology | Ten simple rules for research with humans | I like all of the rules, but particularly like Rule 2. Balance consent and confidentiality | #Education #Bioinformatics #Genomics #OpenScience #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

7 months ago

Ten simple rules for success as a trainee-led outreach organization in computational biology education

From @plos.org #Computational #Biology | Ten simple rules for success as a trainee-led outreach organization in computational biology education | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

7 months ago

From Jason Papin and colleagues in @plos.org #Computational #Biology | Ten simple rules for developing a training program | #Education #Bioinformatics #PLOSCBTSR #OpenScience 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

7 months ago

Ten simple rules for navigating AI in science

From @alicemalivert.bsky.social ‪@marcusghosh.bsky.social ‬ & colleagues in @plos.org #Computational #Biology | Ten simple rules for navigating AI in science | #Education #Bioinformatics #PLOSCBTSR #OpenScience #AI 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

8 months ago

Ten simple rules for thriving in a post-baccalaureate research program

From @michaelle.bsky.social and colleagues in @plos.org #Computational #Biology | Ten simple rules for thriving in a post-baccalaureate research program | #Research #Education #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

8 months ago

Ten simple rules for faculty members building just and equitable environments in academic science

From @drvgmartinacosta.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for faculty members building just and equitable environments in academic science | #Education #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

8 months ago

From @knaegle.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for effectively assessing lab environments | I like all of the rules, but particularly Rule 10: Know the emergency exits | #Education #PLOSCBTSR 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

9 months ago

Ten simple rules for queer data collection and analysis by STEM researchers Queer people are still underrepresented both as STEM researchers and participants, partially due to a dearth of accurate data on this demographic. The lack of consideration for queer identities in dat...

From dgrijseels.bsky.social & colleagues in @plos.org #Computational #Biology | Ten simple rules for queer data collection and analysis by STEM researchers | #Education #Bioinformatics #PLOSCBTSR #STEM 🧬 🖥️ 🧪 🏳️‍🌈🏳️‍⚧️🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

11 months ago

Ten simple rules for getting started with knowledge mobilization

From @plos.org #Computational #Biology | Ten simple rules for getting started with knowledge mobilization | I like all of the rules, nut particularly Rule 10: Learn from your experiences | #Education #PLOSCBTSR #OpenScience 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

11 months ago

From @plos.org #Computational #Biology: An old one, but still a nice one to remember (as I do my Section Editor tasks) | Ten simple rules for writing a response to reviewers | #Education #Bioinformatics #PLOSCBTSR #OpenScience #OpenAccess 🧬 🖥️ 🧪 🔓
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journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

1 year ago

Ten simple rules for fostering creativity in research labs Research lab groups are hotspots for the education of the next generation of scientists, and making these units work as creatively as possible is essential for solving pressing issues in biology, the ...

From @mrillig.bsky.social in @plos.org #Computational #Biology | Ten simple rules for fostering creativity in research labs | I like Rule 10: Lead by example | #Education #Bioinformatics #PLOSCBTSR 🧬 🖥️ 🧪 #OpenScience #OpenAccess
➡️ journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

1 year ago

Ten simple rules to complete successfully a computational MSc thesis project The thesis project is an essential step to obtain an MSc degree. Within STEM and Life Sciences disciplines, computational theses have specific characteristics that differentiate them from wet laborato...

From @plos.org #Computational #Biology | Ten simple rules to complete successfully a computational MSc thesis project | I like Fig 2 and Rule 6: Start writing on day 1: Avoid procrastination by computation | #Bioinformatics #Education #PLOSCBTSR 🧬 🖥️ 🧪
journals.plos.org/ploscompbiol...

BF Francis Ouellette

@bffo.bsky.social

1 year ago

Ten simple rules for good model-sharing practices Computational models are complex scientific constructs that have become essential for us to better understand the world. Many models are valuable for peers within and beyond disciplinary boundaries. H...

From @plos.org #Computational #Biology | Ten simple rules for good model-sharing practices | I like all of the rules, but particularly Rule 6: Publicly recognize and reward research software engineers | #Education #Bioinformatics #PLOSCBTSR 🧬 🖥️ 🧪

journals.plos.org/ploscompbiol...