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Posts tagged #PathogenGenomics

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A multi-epitope vaccine candidate for Mycobacterium tuberculosis demonstrates how immunoinformatics can guide antigen discovery and vaccine development.
doi.org/10.1016/j.dc...
#Tuberculosis #VaccineDesign #Immunoinformatics #PathogenGenomics #TBResearch

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Genomic characterization of Enterobacter hormaechei from a urinary tract infection identifies key antibiotic-resistance determinants and mobile genetic elements shaping pathogen evolution.
doi.org/10.1016/j.dc...
#Enterobacter #AntimicrobialResistance #PathogenGenomics #UTI #MobileGeneticElements

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Decoding Infection and Transmission welcomes submissions advancing infectious-disease research—from pathogen genomics to transmission dynamics and molecular epidemiology.
Submit your research:
www.editorialmanager.com/dcit/default...
#InfectiousDiseaseResearch #PathogenGenomics #Microbiology

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Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj

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Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf

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Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://bit.ly/41FbnDR

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Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://bit.ly/3URSw3O

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Pathoplexus | Pathoplexus November Update Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.

12/ 🔗 Read the full update here → pathoplexus.org/news/2025-11...

#PathogenGenomics #OpenData #OpenScience #PublicHealth #Bioinformatics

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Only 4 days to go until our Young People’s Genomic Café ☕🧬

Hear from Laura Gifford and Joanne Watkins of the Pathogen Genomics Unit as they share insights into career opportunities within #PenGU🐧.

📅 21 Oct | ⏰ 17:30–19:00
🔗 Book your spot 👉 bit.ly/3WAqmv5

#Genomics #Careers #PathogenGenomics

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Fun fact: She started her career as a diagnostician–and now focuses on research to solve the toughest diagnostic problems.

#COMPASSCenter #SciSky #OneHealth #VectorBiology #PathogenGenomics #Cornell #VirusResearch

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⏳Only 1 day to go!

This Genomics Café features Public Health Wales’ Pathogen Genomics Unit (PenGU🐧). Their talk, ‘The Hidden Lab’, shows how genomics is aiding our knowledge of pathogens from COVID-19 to influenza.

📅2 Oct
⏰11–12:45

Secure your spot👉 bit.ly/4mHxAsE
#Genomics #PathogenGenomics

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PathoBase: an integrated One Health approach for zoonotic pathogen genomics analysis - One Health Advances The rapid identification and genomic analysis of zoonotic pathogens are essential for effective disease surveillance and outbreak response. PathoBase, an advanced computational platform developed for ...

Introducing PathoBase:
A new Asia-housed genomic platform for rapid analysis of zoonotic pathogens. Supports cgMLST typing & real-time outbreak tracing. Free access for global researchers. 🧬🔍
#PathogenGenomics #OneHealth
Link: pathobase.iotabiome.com

👉
onehealthadv.biomedcentral.com/articles/10....

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#SFUFHS #SFU #SFUResearch #HealthResearch #EnvironmentalHealth #CIHRProjectGrant #OverdosePrevention #PathogenGenomics

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🧬 Our #myBaits tech helped power a major study on plague-driven human evolution—featured by CNN!
Shoutout to our very own Jennifer Klunk, PhD, for representing @arborbio.bsky.social in this fascinating work
🔗 www.cnn.com/2025/06/03/s...
#Genomics #AncientDNA #HumanEvolution #Plague #PathogenGenomics

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Goig et al. 2025, Fig. 3 | The TB burden caused by each humanadapted MTBC lineage. The absolute number of tuberculosis (TB) cases caused by each Mycobacterium tuberculosis complex (MTBC) lineage was estimated based on the TB incidence reported by the World Health Organization for the year 2022 (ref. 56) and the proportion of each lineage estimated by ref. 55 (Supplementary Methods). a, The estimated absolute number of TB cases across 85 countries stratified by MTBC lineage. b, The estimated absolute number of TB cases in ten high TB burden countries, stratified by MTBC lineage. The colour coding of each MTBC lineage corresponds to those used in Fig. 1.

Source: Galo A. Goig, Etthel M. Windels, Chloé Loiseau, Christoph Stritt, Loza Biru, Sonia Borrell, Daniela Brites, and Sebastien Gagneux. “Ecology, Global Diversity and Evolutionary Mechanisms in the Mycobacterium tuberculosis Complex,” Nature Reviews: Microbiology, published: 25 March 2025 https://doi.org/10.1038/s41579-025-01159-w.

Goig et al. 2025, Fig. 3 | The TB burden caused by each humanadapted MTBC lineage. The absolute number of tuberculosis (TB) cases caused by each Mycobacterium tuberculosis complex (MTBC) lineage was estimated based on the TB incidence reported by the World Health Organization for the year 2022 (ref. 56) and the proportion of each lineage estimated by ref. 55 (Supplementary Methods). a, The estimated absolute number of TB cases across 85 countries stratified by MTBC lineage. b, The estimated absolute number of TB cases in ten high TB burden countries, stratified by MTBC lineage. The colour coding of each MTBC lineage corresponds to those used in Fig. 1. Source: Galo A. Goig, Etthel M. Windels, Chloé Loiseau, Christoph Stritt, Loza Biru, Sonia Borrell, Daniela Brites, and Sebastien Gagneux. “Ecology, Global Diversity and Evolutionary Mechanisms in the Mycobacterium tuberculosis Complex,” Nature Reviews: Microbiology, published: 25 March 2025 https://doi.org/10.1038/s41579-025-01159-w.

Here's an example of a study that *does* take the evolutionary/historical distinctiveness of different pathogen lineages seriously in terms of implications for #GlobalHealth concerns. This chart from Goig et al 2025 shows diff. burdens posed by TB. These have historical roots! #TB #PathogenGenomics

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🚨CALL FOR ABSTRACTS🚨

Abstract submission deadline:
📆 Mon, March 24

Abstract submission 👉 bit.ly/symposium_su...
Event details & registration 👉 bit.ly/cpgme

The Pathogen Genomics Symposium will be held Mon, April 7.

#globalhealth #pathogengenomics #PathGenSymposium

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Next-Gen Sequencing (NGS) with #MinION is revolutionizing #AMR surveillance, offering real-time insights into microbial genomes. Rapid, portable, and powerful—because precision diagnostics can’t wait! ⏳ #OneHealth #Microbiology #PathogenGenomics

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Wellcome Connecting Science - 2025 learning and training events:

Epigenomics of Common Diseases | Conference | Submit an abstract by 14 January 

Genomic Imprinting – from Biology to Disease | Conference | Submit an abstract by 14 January 

World Congress on Genetic Counselling | Conference | Register by 28 January 

CRISPR and Beyond | Conference | Apply for a bursary by 14 January

Low Input Epigenomics | Course | Apply by 11 February

Fungal Pathogen Genomics | Virtual course | Apply by 18 March

Wellcome Connecting Science - 2025 learning and training events: Epigenomics of Common Diseases | Conference | Submit an abstract by 14 January Genomic Imprinting – from Biology to Disease | Conference | Submit an abstract by 14 January World Congress on Genetic Counselling | Conference | Register by 28 January CRISPR and Beyond | Conference | Apply for a bursary by 14 January Low Input Epigenomics | Course | Apply by 11 February Fungal Pathogen Genomics | Virtual course | Apply by 18 March

Kickstart 2025 with us and invest in advancing your #genomics career!🚀

Join us to develop skills and knowledge across all aspects of human genomics, #bioinformatics, #PathogenGenomics, #Epigenomics, and #SciencePolicy

Events open now: coursesandconferences.wellcomeconnectingscience.org/our-events/

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The Next Generation Sequencing Quality Initiative Learn about the Next Generation Sequencing Quality Initiative.

For those of you out there in #pathogengenomics land that have not already discovered the CDC/APHL NGS Quality Initiative (www.cdc.gov/lab-quality/...), it is definitely worth checking out. This AMD-supported project is led by SMEs from across public health, and has developed >100 tools & resources.

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So excited to see the incredible development of GenSpectrum. Huge congratulations to @chaoranchen.de and the team! #pathogengenomics #opensource #pathoplexus #bioinformatics #publichealth

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An inspiring start to #AMDDays this year! Over 600 registered from across the US public health system, academia and industry, sharing progress in pathogen genomics, bioinformatics and molecular epidemiology. #publichealth #pathogengenomics

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