Latest posts tagged with #SeqCode on Bluesky
SeqCode recognizes strains and their value for experimental work. However, type material in #SeqCode consists of genome sequence that unambiguously defines a species. The request suggests using strains as paratypes of genomic type material.
doi.org/10.1093/isme...
The justification must be solid, and consulting the broader stakeholder community, those who actually work with the microbe, is essential as these changes directly impact their work 🧬🔬
#bacteria #microbes #Pseudomonas #SeqCode #ICNP #systematics #taxonomy
@isme-microbes.bsky.social @femsmicro.org
@isme-microbes.bsky.social offers a great opportunity to publish uncultured microbes via #SeqCode using #genomes as type material. A fantastic step toward embracing the true diversity of microbes! But isolates are also welcome 🧫🔬🦠😁
@seqcode.bsky.social
🎉 The #SeqCode has reached a significant milestone: with the validation of the genus Skiveiella, a total of 1,000 #names have now been validly published under the SeqCode.
This achievement marks a major step forward in the adoption and impact of the SeqCode within the scientific community.
Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov.
#microbiology #bacteria #SeqCode
www.sciencedirect.com/science/arti...
Part 2 of our #SeqCode video series is here!
This time, we dive into #Latin and #name formation, presented by Dr. Dominik Berrens from Johannes Gutenberg-Universität in Mainz.
🍿 Enjoy share, and don't be shy - ask questions in the comments!
#Nomenclature #Taxonomy
www.youtube.com/watch?v=eldx...
A brief introduction to the #SeqCode is now online!
Check it out, share it with your colleagues, and let us know what you think!
Bravo to @rodriguez-r.bsky.social for preparing and recording this!
Part# 1
www.youtube.com/watch?v=3-wk...
Proposal of Patescibacterium as the type genus of the phylum Patescibacteriota with Patescibacterium danicum as the type species under #SeqCode
#microbiology #taxonomy
@isme-microbes.bsky.social @seqcode.bsky.social
academic.oup.com/ismecommun/a...
But, there is obviously a controversy brewing when it comes to authors publishing names under the ICNP that are in conflict with #SeqCode validated names. This is possible since the ICSP does not (yet) recognize SeqCode names. Hopefully that will change soon.
Not so fast 😊 , #Patescibacteriota is a validly published phylum name under the #SeqCode and is here to stay ;-)
A 6-month discussion on the revision of the #ICNP is underway, including #Section_10 to regulate the #Candidatus names. Pro-statuses will be added to the names with various nomenclature types 🤔.
Please share your thoughts:
icnp-revision.slack.com
How to join: doi.org/10.1099/ijse...
#SeqCode
"MIRRI-ERIC fully supports the importance of maintaining physical type strains as NTs, while also recommending genome sequence data that meet SeqCode's quality standards as additional NTs." 👏
#Nomenclature #SeqCode #Taxonomy #genomes
Originally defined by Rinke et al. (2013) as Candidatus Patescibacteria, the phylum #Patescibacteriota now has a validly published name and an official type!
Explore the lifestyle, biogeography, and metabolic capabilities of its type genus, #Patescibacterium, here: doi.org/10.1093/isme...
#SeqCode
#SeqCode, a nomenclatural code for prokaryotes described from sequence data, is on BlueSky! Follow @seqcode.bsky.social 🧬🖥🦠🧫🔬🧪
Did you know that the #GTDB phylum #CSP1-3 is now called #Sysuimicrobiota?
This new name originates from its type genus, which is named after Sun Yat-Sen University (SYSU) in China.
Explore all newly named members here: registry.seqco.de/registers/r:...
Read: doi.org/10.1093/nsr/...
#SeqCode
Read more about the code: doi.org/10.1038/s415...
Explore the SeqCode Registry: registry.seqco.de
#SeqCode #Nomenclature #Genomes #Bacteria #Archaea
Since 2022, the SeqCode Registry has enabled the valid publication of 700+ names, providing nomenclatural stability and recognition for prokaryotes described without pure cultures. We’re a small but growing community advancing the use of genomic data in naming microorganisms.
#SeqCode #Nomenclature
This paper is part of a special issue of SAM partnered with
#seqcode, as we also propose names for two novel genera within the MB11C04 family, as well as suggest a non-alphanumeric name, Seribacteraceae. Check it out!
