#TrackMate

@dgaboriau.bsky.social

3 months ago

Jean-Yves @jytinevez.bsky.social showcases the new #Trackmate version and the breadth of image analysis done at @pasteur.fr

#CBIAS2025

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Arthur Michaut 🔬🐣

@amichaut.bsky.social

3 months ago

Once again, a really impressive effort from the #TrackMate team. Beautiful!

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Rachel Lee, PhD

@scientistrachel.bsky.social

4 months ago

Working with #TrackMate, participants at #InsightFromImaging were able to explore tracking parameters and the tradeoffs inherent in analysis. It was another fun discussion! 🤓

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AIC at Janelia

@aicjanelia.bsky.social

4 months ago

A collage of photos, which show people analyzing images and giving presentations.

This morning at #InsightFromImaging we focused on particle tracking. After a lecture by @jesseaic.bsky.social, participants split into groups to use #TrackMate to track our HL60 migration data from yesterday, followed by presentations on their results 📈

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kuba sędziński

@kuba-sedzinski.bsky.social

5 months ago

4/14🔬 We captured 16-to 22-hour 3D movies of this process. However, segmenting and tracking individual cells in a dense 3D tissue is a challenging task. We built a deep learning pipeline that combines the forces of #StarDist, #UNET, #Cellpose, and #TrackMate. 💪#ImageAnalysis

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Ignacio Arganda-Carreras

@iarganda.bsky.social

5 months ago

... and we keep tracking 👣 with @jytinevez.bsky.social after a delicious coffee break ☕

On-site and on-line, plenty of useful things are been shown and learnt about #TrackMate!

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Ignacio Arganda-Carreras

@iarganda.bsky.social

5 months ago

Jean-Yves Tinevez addresses the students of the EMBO course to present "Practical session 3: Tracking".

Jean-Yves Tinevez shows an slide about "Scientific tools to track cells and organelles", including TrackMate, MaMuT and Mastodon software.

Jean-Yves Tinevez shows an slide about TrackMate v8, with bacteria images already segmented.

Jean-Yves Tinevez shows an slide entitled "A collection of tracking components at your fingertips", showing a long list of segmentation software including MorphoLibJ, Trainable Weka Segmentation, Ilastik, StarDist, cellpose, and more.

Day 3️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" at @embl.org with "Practical session 3: Tracking" 🔬🦠🔀.

@jytinevez.bsky.social is already shining at the stage! 🕺🪩.

Important update: #TrackMate v8 is coming! 🤗

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Laurent Guerard

@lguerard.bsky.social

8 months ago

Day 2 of #Zidas2025

Day 2 of #Zidas2025 is happening!

After a lecture from @ahklemm.bsky.social, it's now time for hands on with @ilastik-team.bsky.social by @benediktbest.bsky.social from Anna Kreshuk's lab and some tracking in the afternoon with #Trackmate from @jytinevez.bsky.social !

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Joanna Chustecki

@chusteckisci.bsky.social

11 months ago

I hope lots of #GoPMF folks liked my intro to #Trackmate !

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@juliusbogo.bsky.social

1 year ago

We took a “no cell shall be left behind” approach which wouldn’t be possible without #Cellpose, #TrackMate by @jytinevez.bsky.social , #Fiji and #rstats analysis and visualization with GlmmTMB, emmeans and #SuperPlots and microscopy cores at UCSD. Plasmids available from @addgene.bsky.social

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Dave Barry

@david-j-barry.bsky.social

1 year ago

SoFT: Detecting and tracking magnetic structures in the solar photosphere | Astronomy & Astrophysics (A&A)Mendeley Astronomy & Astrophysics (A&A) is an international journal which publishes papers on all aspects of astronomy and astrophysics

I often assume the #astronomy community is way ahead of the #lifesciences in #imageanalysis, so I'm somewhat surprised to come across this - are astronomy folks not aware of tools like #TrackMate and #btrack?

www.aanda.org/articles/aa/...

This gives me an idea for inter-disciplinary workshop...