#bcftools

Latest posts tagged with #bcftools on Bluesky

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Posts tagged #bcftools

Andrew Whitwham

@whitwham.bsky.social

9 months ago

Samtools Samtools

Release 1.22 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See htslib.org/download/ for links to tarballs and release notes. 🧪

#samtools #bcftools #htslib #bioinformatics

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Luke Pembleton

@lwpembleton.bsky.social

1 year ago

Release 4.6.0.0 · broadinstitute/gatk Download release: gatk-4.6.0.0.zip Docker image: https://hub.docker.com/r/broadinstitute/gatk/ Highlights of the 4.6.0.0 release: We've fixed a serious CRAM writing bug that affects GATK versions...

So after much community backlash #GATK has reverted back to the ./. representation for no-calls.

The question is, will something like this occur again? and how many people have already switched away to other tools like #bcftools.

#genomics #bioinformatics
github.com/broadinstitu...

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Luke Pembleton

@lwpembleton.bsky.social

1 year ago

What’s everyone’s thoughts and experience on merging large numbers of gvcf files. Currently I’m running #bcftools merge, but as a tree merge process (multiple smaller merges that then get merged together). Are there any tools or hacks people are using? 🧬
#genomics #vcf #bioinformatics

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