Spatial cluster matching rate among overlapping spots improves when using visiumStitched. It's also better for highly variable genes (HVGs) used as input to BayesSpace, and with spatially variable genes (SVGs) identified with nnSVG when using PRECAST.
One 💯 update is how @nick-eagles.bsky.social used the overlapping spots to calculate a matching rate in spatial cluster assignments
#BayesSpace with HVGs does better, whereas #PRECAST with #nnSVG SVGs does slightly better. Both improve when using #visiumStitched to increase the number of neighbors
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