Better workflow graph (more compact for long commands and paths by auto-folding), coming up in the next release of #scicommander ... #sciworkflows
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#sciworkflows
Latest posts tagged with #sciworkflows on Bluesky
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I might be biased (as they mention scipipe.org), but a recommended related paper:
www.nature.com/articles/s41... #sciworkflows
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Always nice when someone has not only cited you, but also actually read your paper 😊 Hat tip to the authors! 👍
doi.org/10.1016/j.co... #sciworkflows
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Want to help shaping the future of #Snakemake? Then participate in the Snakemake hackathon 2026 in Munich! There's still room as the maximum number of participants is not yet reached. You can register here: indico.cern.ch/e/snakemake-...
#sciworkflows #reproducibility
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Version 3 of the Snakemake rolling paper is now pulbished on @f1000publishing.bsky.social: f1000research.com/articles/10-...
We have updated the presented features and the design patterns.
#sciworkflows #reproducibility
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Describo UI
Describo UI
NovaCrate UI
NovaCrate UI
Visualizing an RO-Crate archive with Describo and NovaCrate #OpenSource #Provenance #Metadata #rocrate #graph #UI #dataviz #workflows #sciworkflows
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The Destination Earth Climate Digital Twin workflow is now open source! It's available from Destination Earth's GitHub org, soon with RO-Crate and uploaded to WorkflowHub.
github.com/DestinE-Clim... & github.com/DestinE-Clim...
#OpenSource #workflow #SciWorkflows #HPC
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New blog post “Running Cylc workflows on BSC MareNostrum5” kinoshita.eti.br/2025/05/25/r... #cylc #sciworkflows #workflows #graph #hpc #autosubmit #ecflow #networking
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Postgres support coming to Autosubmit soon 🚀 code & unit tests finished, we are now starting the manual testing & final adjustments to test it on EDITO Model Lab 🤓 github.com/BSC-ES/autos... #autosubmit #SciWorkflows #workflows #postgres #sqlalchemy #python #OpenSource #BSC #EDITO
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Screenshot of the Cylc workflow starting up...
And screenshot of the execution result (it was a success).
Executed my first Cylc Flow 8 workflow on BSC MareNostrum5 🚀🧑🚀 It works if you enable the polling mode & intervals 😀 cylc.github.io/cylc-doc/sta... #OpenSource #Workflows #SciWorkflows #Cylc #BSC #MareNostrum5 #HPC #Slurm #EuroHPC
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Book cover of "FAIR Research Objects and Computational Workflows - A Linked Data approach" by Stian Soiland-Reyes.
"FAIR Research Objects and Computational Workflows - A Linked Data approach" by Stian Soiland-Reyes. A must-have book for anyone working with Workflows, FAIR, Reproducibility, Linked Data, and Semantic Web (and more!). #sciworkflows #books #fair #reproducibility #workflows #rocrate
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Screenshot of the CWL Viewer rendering its "compile.cwl" landing page example.
Fixed an annoying “operator does not exist: jsonb = bytea” Hibernate/SpringBoot bug in CWLViewer before it turned 6 months! 😅 Now pending a test and confirmation that it's working by OP of the issue github.com/common-workf... #OpenSource #Java #SpringBoot #CWL #SciWorkflows #hibernate #postgresql
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"FAIR Digital Objects in Autosubmit Workflows" www.tib-op.org/ojs/index.ph... #opensource #fair #workflows #sciworkflows #climate #fdo #rocrate #autosubmit
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New paper out in Nature Scientific Data: “Applying the FAIR Principles to computational workflows”, Wilkinson, S.R., Aloqalaa, M., Belhajjame, K. et al., 2025 (open access): www.nature.com/articles/s41... #workflows #sciworkflows #fair #fairness #rocrate #reproducibility #fdo #provenance
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#Snakemake 8.25.4 has been released with lots of little bug fixes: snakemake.readthedocs.io/en/stable/pr... #sciworkflows #reproducibility
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#snakemake 8.14 has been released. It supports setting the shell to use per rule if needed (e.g. if your analysis step runs in a container that does not have bash shell).
#sciworkflows #reproducibility
snakemake.github.io
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#Snakemake has recently reached 1 million downloads on #Bioconda! snakemake.github.io
#sciworkflows #reproducibility
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