// by Rene Buschow (@molgen.mpg.de 2024), IJ 1.53c, requires morpholib, starts on binary image
function doAxis()
{
id=getTitle();
run("Convert to Mask");
run("Skeletonize");
run("Geodesic Diameter", "label="+id+" distances=[Quasi-Euclidean (1,1.41)] show image="+id+" export");
roiManager("Select", roiManager("count")-1);
run("Interpolate", "interval=50 smooth adjust");
roiManager("update");
}
doAxis()
@jesseveenvliet.bsky.social Dr. Jesse as promissed ap-axis drawer... its only ~5 lines... but can save many hours #throughput #imageanalysis #imagej