#CellPhoneDB

Latest posts tagged with #CellPhoneDB on Bluesky

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Posts tagged #CellPhoneDB

Nature Protocols

@natprot.nature.com

11 months ago

Advancing cell–cell communication analysis from single-cell genomics data - Nature Protocols CellPhoneDB infers cell–cell communication by integrating single-cell genomics data with a curated database of ligand–receptor interactions. Now, a Protocol Update describes the latest version of the ...

News & Views discussing the latest implementation of the computational tool #CellPhoneDB for inferring #cellcellcommunication from #singlecelldata bit.ly/42gSmXi

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Nature Protocols

@natprot.nature.com

11 months ago

CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data - Nature Protocols CellPhoneDB combines a curated database of receptor–ligand interactions with methods to infer cell–cell communication from single-cell expression data. This protocol update describes an expanded datab...

#NewNProt: Protocol Update of #CellPhoneDB, describing an expanded database of molecular interactors and new approaches to infer, prioritise and visualise the results bit.ly/4lbG2Af and see associated News & Views article

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Hao Yin

@haoyin.bsky.social

2 years ago

Benchmarking sequencing-based #SpatialTranscriptomic methods

#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq

Different ST methods yield inconsistent cell-cell communication results by #CellChat #CellPhoneDB

bioRxiv 2023
www.biorxiv.org/content/10.1...

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